RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LNPEPQ9UIQ6 1025 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 NUP50Q9UKX7 468 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 KPTNQ9Y664 436 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 U3KQA8 63 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 ZNF638Q14966 1978 aaKnown RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 TNRC6AQ8NDV7 1962 aaKnown RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 MYMKA6NI61 221 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 VSTM2BA6NLU5 285 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 PRAC2D3DTV9 90 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 NPIPB9F8W1W9 429 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 C19orf84I3L1E1 186 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 PFKFB2O60825 505 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 FZD7O75084 574 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 TSPAN13O95857 204 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 HPP00738 406 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 NGFRP08138 427 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 UBTFL1P0CB47 393 aaPredicted RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 HPGDP15428 266 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 ZNF3P17036 446 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 FCGR2CP31995 323 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 RPL9P32969 192 aaKnown RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 RORAP35398 523 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 PAX9P55771 341 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 ZNF33BQ06732 778 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 COTL1Q14019 142 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 TRIM16LQ309B1 348 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 LGSNQ5TDP6 509 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 C9orf135Q5VTT2 229 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 C16orf47Q6ZP98 133 aaPredicted RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 LRRC74BQ6ZQY2 392 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 SLC47A2Q86VL8 602 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 PELI3Q8N2H9 469 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 METTL27Q8N6F8 245 aaPredicted RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 CSNK1A1LQ8N752 337 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 C15orf54Q8N8G6 183 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 ACBD4Q8NC06 268 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 OR5AP2Q8NGF4 316 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 PLPPR1Q8TBJ4 325 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 PCNPQ8WW12 178 aaKnown RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 PSMG2Q969U7 264 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 FAF2Q96CS3 445 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 ARL5BQ96KC2 179 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 RCHY1Q96PM5 261 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 OR5B2Q96R09 309 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 RNF2Q99496 336 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 FAM173AQ9BQD7 235 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 HINT2Q9BX68 163 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 FRMD8P1Q9BZ68 369 aaPredicted RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 RNF41Q9H4P4 317 aaPredicted RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 NHEJ1Q9H9Q4 299 aaPredicted RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 ADAP2Q9NPF8 381 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 MEPEQ9NQ76 525 aaPredicted RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 ASF1BQ9NVP2 202 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 CTSFQ9UBX1 484 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 CD300AQ9UGN4 299 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 NTNG1Q9Y2I2 539 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 RBMX2Q9Y388 322 aaKnown RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 MRPS18CQ9Y3D5 142 aaKnown RBP4.77□□□□□ -1.65
VPS53-219ENST00000576019 AKAP6Q13023 2319 aa4.77□□□□□ -1.65
VPS53-219ENST00000576019 NUMA1Q14980 2115 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 STK36Q9NRP7 1315 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 KBTBD11-OT1A0A1B0GTJ5 212 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 NR5A2O00482 541 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 RAB29O14966 203 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 ZNF749O43361 778 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 OAZ2O95190 189 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 IGHG4P01861 327 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 CRYABP02511 175 aaKnown RBP4.76□□□□□ -1.65
VPS53-219ENST00000576019 TPM3P06753 285 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 CCL2P13500 99 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 PSMD4P55036 377 aaKnown RBP4.76□□□□□ -1.65
VPS53-219ENST00000576019 ARPP19P56211 112 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 DHODHQ02127 395 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 CDH17Q12864 832 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 NDUFA9Q16795 377 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 SOHLH1Q5JUK2 328 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 ACER2Q5QJU3 275 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 C22orf42Q6IC83 251 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 ZNF549Q6P9A3 640 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 C6orf89Q6UWU4 347 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 STAC2Q6ZMT1 411 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 Q6ZSR3 168 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 STXBP4Q6ZWJ1 553 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 NDUFAF7Q7L592 441 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 TRPT1Q86TN4 253 aaKnown RBP4.76□□□□□ -1.65
VPS53-219ENST00000576019 IFNEQ86WN2 208 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 SLC25A45Q8N413 288 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 LINC00469Q8N7U9 141 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 STPG4Q8N801 248 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 LRRC75AQ8NAA5 344 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 OR52H1Q8NGJ2 320 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 CA5BP1Q8WTZ4 195 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 CCDC12Q8WUD4 166 aaPredicted RBP4.76□□□□□ -1.65
VPS53-219ENST00000576019 CACNG8Q8WXS5 425 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 CIDECQ96AQ7 238 aaPredicted RBP4.76□□□□□ -1.65
VPS53-219ENST00000576019 C8orf44Q96CB5 159 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 TM6SF2Q9BZW4 377 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 MFFQ9GZY8 342 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 HOXD1Q9GZZ0 328 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 NEUROG2Q9H2A3 272 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms