RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 EBPQ15125 230 aaKnown RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ZNF674Q2M3X9 581 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 Q499Y3 187 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 GXYLT1Q4G148 440 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 GALNTL5Q7Z4T8 443 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 MRGPREQ86SM8 312 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 PARGQ86W56 976 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 DND1Q8IYX4 353 aaKnown RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 FRMD1Q8N878 549 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ZNF383Q8NA42 475 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 COX14Q96I36 57 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 NRIP2Q9BQI9 281 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SLC25A21Q9BQT8 299 aaPredicted RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ULBP3Q9BZM4 244 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 RSPH9Q9H1X1 276 aaPredicted RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SRA1Q9HD15 236 aaKnown RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 CKLFQ9UBR5 152 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ETV7Q9Y603 341 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 TBC1D3EA0A087X179 549 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 TMEM272A0A1B0GTI8 110 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 AP4M1O00189 453 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 CLN5O75503 358 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ZFPL1O95159 310 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 EPPINO95925 133 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ARG1P05089 322 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SPARCP09486 303 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 DPP4P27487 766 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 LAP3P28838 519 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 BSGP35613 385 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 CCR4P51679 360 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 RAB11BQ15907 218 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 HNRNPA1L2Q32P51 320 aaKnown RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 EXOSC6Q5RKV6 272 aaKnown RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 CACUL1Q86Y37 369 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SLC35F3Q8IY50 421 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 C15orf54Q8N8G6 183 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 OR6N2Q8NGY6 317 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 OR8D1Q8WZ84 308 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 NMNAT3Q96T66 252 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 NAA11Q9BSU3 229 aaPredicted RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ACTRT3Q9BYD9 372 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SLC23A2Q9UGH3 650 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ST6GALNAC2Q9UJ37 374 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SPENQ96T58 3664 aaKnown RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 PRR19A6NJB7 356 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ZNF729A6NN14 1252 aaPredicted RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 EFCAB7A8K855 629 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 BLOC1S5-TXNDC5H3BN57 136 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 YIF1AO95070 293 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 TXNDC12O95881 172 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SFTPBP07988 381 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 FBP1P09467 338 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ZGLP1P0C6A0 271 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 MUC1P15941 1255 aaPredicted RBP8.72□□□□□ -1.01
CCDC40-212ENST00000574799 CHAF1BQ13112 559 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SHHQ15465 462 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ACTBL2Q562R1 376 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 BEND4Q6ZU67 534 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SLC36A1Q7Z2H8 476 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 ZNF511Q8NB15 262 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 OR5M8Q8NGP6 311 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 SMIM3Q9BZL3 60 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 KCNK15Q9H427 330 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 TM7SF3Q9NS93 570 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 RXFP3Q9NSD7 469 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 CLDND1Q9NY35 253 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 EPHA6Q9UF33 1036 aa8.72□□□□□ -1.01
CCDC40-212ENST00000574799 TRAV14DV4A0A0A6YYC5 116 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 DCTN6O00399 190 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 XRCC3O43542 346 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 SRPX2O60687 465 aaPredicted RBP8.71□□□□□ -1.01
CCDC40-212ENST00000574799 SLC35G4P0C7Q5 338 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 F3P13726 295 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 ADH6P28332 368 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 P2RY2P41231 377 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 PCBP4P57723 403 aaKnown RBP8.71□□□□□ -1.01
CCDC40-212ENST00000574799 ECH1Q13011 328 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 RSU1Q15404 277 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 ABHD13Q7L211 337 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 MFSD8Q8NHS3 518 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 CMTM3Q96MX0 182 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 SUCNR1Q9BXA5 334 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 LAMP5Q9UJQ1 280 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 WDR87Q6ZQQ6 2873 aa8.71□□□□□ -1.01
CCDC40-212ENST00000574799 C17orf113A0A1B0GUU1 675 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 FITM1A5D6W6 292 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 IFNA2P01563 188 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 ADRB3P13945 408 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 IL10RAQ13651 578 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 MRPL2Q5T653 305 aaKnown RBP8.71□□□□□ -1.02
CCDC40-212ENST00000574799 CYB5R2Q6BCY4 276 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 LPCAT3Q6P1A2 487 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 FAM129CQ86XR2 697 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 GALNT16Q8N428 558 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 OR10D4PQ8NGN7 298 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 PHYHIPQ92561 330 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 FGF11Q92914 225 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 FAM131CQ96AQ9 280 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 SGPP1Q9BX95 441 aa8.71□□□□□ -1.02
CCDC40-212ENST00000574799 LAT2Q9GZY6 243 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms