RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 TMED7Q9Y3B3 224 aa13.06□□□□□ -0.32
SMG6-215ENST00000574501 ELOA3DA6NLF2 546 aaPredicted RBP13.05□□□□□ -0.32
SMG6-215ENST00000574501 OR52A4PA6NMU1 304 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 F8VVB4 439 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 F8VWA3 439 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 NQO2P16083 231 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 VAMP1P23763 118 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 ZBTB25P24278 435 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 CCKBRP32239 447 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 GABRA3P34903 492 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 RAB28P51157 221 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 CXADRP78310 365 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 ELOA3BQ3SY89 546 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 JAZF1Q86VZ6 243 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 FAM219AQ8IW50 185 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 ELOA3Q8NG57 546 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 OR2G2Q8NGZ5 317 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 TSEN15Q8WW01 171 aaKnown RBP13.05□□□□□ -0.32
SMG6-215ENST00000574501 ZC3H10Q96K80 434 aaKnown RBP13.05□□□□□ -0.32
SMG6-215ENST00000574501 CYTL1Q9NRR1 136 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 HCFC1R1Q9NWW0 138 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 TRBV5-7A0A0A0MS05 114 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 LOC100289279A0A1B0GTE1 492 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 POM121BA6NF01 834 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 LRRC72A6NJI9 287 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 OR4C45A6NMZ5 311 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 C9JQL5 133 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 LDB3O75112 727 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 ZNF14P17017 642 aaPredicted RBP13.05□□□□□ -0.32
SMG6-215ENST00000574501 RBM34P42696 430 aaKnown RBP13.05□□□□□ -0.32
SMG6-215ENST00000574501 COL19A1Q14993 1142 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 SLC35D3Q5M8T2 416 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 IL34Q6ZMJ4 242 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 LYG2Q86SG7 212 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 TMEFF1Q8IYR6 380 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 PRSS35Q8N3Z0 413 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 RAB42Q8N4Z0 105 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 ZCCHC10Q8TBK6 192 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 ISOC2Q96AB3 205 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 ZNF426Q9BUY5 554 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 NMNAT2Q9BZQ4 307 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 CHMP1AQ9HD42 196 aaPredicted RBP13.05□□□□□ -0.32
SMG6-215ENST00000574501 RPS10P5Q9NQ39 176 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 YBX2Q9Y2T7 364 aaKnown RBP13.05□□□□□ -0.32
SMG6-215ENST00000574501 WNT6Q9Y6F9 365 aa13.05□□□□□ -0.32
SMG6-215ENST00000574501 C9orf170A2RU37 121 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 C1QTNF3-AMACRE9PGA6 284 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 RNASEK-C17orf49H0YIS7 233 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 H7C1C5 153 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 PRF1P14222 555 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 PSMB6P28072 239 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 ACAA2P42765 397 aaKnown RBP13.04□□□□□ -0.32
SMG6-215ENST00000574501 VEGFBP49765 207 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 LCN6P62502 163 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 CAP1Q01518 475 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 DPTQ07507 201 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 OR52W1Q6IF63 320 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 ETFBKMTQ8IXQ9 262 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 LILRB2Q8N423 598 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 C15orf54Q8N8G6 183 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 GPR148Q8TDV2 347 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 EDEM2Q9BV94 578 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 COMMD4Q9H0A8 199 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 SEC61A2Q9H9S3 476 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 SCN5AQ14524 2016 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 A0A1W2PPC1 479 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 FITM1A5D6W6 292 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 BLOC1S5-TXNDC5H3BN57 136 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 DCTN6O00399 190 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 GPANK1O95872 356 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 LRG1P02750 347 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 CD14P08571 375 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 AKR1C4P17516 323 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 CST5P28325 142 aaPredicted RBP13.04□□□□□ -0.32
SMG6-215ENST00000574501 ADH6P28332 368 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 CD80P33681 288 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 EIF2B1Q14232 305 aaKnown RBP13.04□□□□□ -0.32
SMG6-215ENST00000574501 KRBOX4Q5JUW0 171 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 OR10K2Q6IF99 312 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 KIRREL2Q6UWL6 708 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.04□□□□□ -0.32
SMG6-215ENST00000574501 DPY19L2P2Q6ZN68 376 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 ABHD13Q7L211 337 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 ADAD2Q8NCV1 583 aaKnown RBP13.04□□□□□ -0.32
SMG6-215ENST00000574501 OR2L3Q8NG85 312 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 ROBO4Q8WZ75 1007 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 NECAB3Q96P71 396 aaPredicted RBP13.04□□□□□ -0.32
SMG6-215ENST00000574501 PHB2Q99623 299 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 LPAR3Q9UBY5 353 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 KLK13Q9UKR3 277 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 KCNK6Q9Y257 313 aa13.04□□□□□ -0.32
SMG6-215ENST00000574501 TEX13DA0A0J9YY54 714 aaPredicted RBP13.03□□□□□ -0.32
SMG6-215ENST00000574501 TMEM235A6NFC5 223 aa13.03□□□□□ -0.32
SMG6-215ENST00000574501 ZNF860A6NHJ4 632 aa13.03□□□□□ -0.32
SMG6-215ENST00000574501 A6NLC8 198 aa13.03□□□□□ -0.32
SMG6-215ENST00000574501 NUDT19A8MXV4 375 aa13.03□□□□□ -0.32
SMG6-215ENST00000574501 ABHD16AO95870 558 aa13.03□□□□□ -0.32
SMG6-215ENST00000574501 FBP1P09467 338 aa13.03□□□□□ -0.32
SMG6-215ENST00000574501 OR8U8P0C7N1 319 aa13.03□□□□□ -0.32
SMG6-215ENST00000574501 ADRB3P13945 408 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms