RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 POU3F4P49335 361 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 CENPAP49450 140 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 DHODHQ02127 395 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 POU4F3Q15319 338 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 SLC18B1Q6NT16 456 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 PRSS58Q8IYP2 241 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 GPR119Q8TDV5 335 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 THRSPQ92748 146 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 OR2A7Q96R45 310 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 GPN1Q9HCN4 374 aaPredicted RBP20.52■□□□□ 0.88
VPS53-211ENST00000571805 ZNF304Q9HCX3 659 aa20.52■□□□□ 0.88
VPS53-211ENST00000571805 OR2M5A3KFT3 312 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 GIPP09681 153 aaPredicted RBP20.51■□□□□ 0.87
VPS53-211ENST00000571805 FBLP22087 321 aaKnown RBP20.51■□□□□ 0.87
VPS53-211ENST00000571805 TSPAN5P62079 268 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 COL19A1Q14993 1142 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 C2orf76Q3KRA6 126 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 C1orf140Q5VVS0 124 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 FAM166AQ6J272 317 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 ZSCAN2Q7Z7L9 614 aaPredicted RBP20.51■□□□□ 0.87
VPS53-211ENST00000571805 OR4C16Q8NGL9 310 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 MARVELD3Q96A59 401 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 LMAN1LQ9HAT1 526 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 SLC22A23A1A5C7 686 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 A8MVM7 634 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 RAD1O60671 282 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 SPARCP09486 303 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 FBXO45P0C2W1 286 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 VSIG10L2P0DP72 767 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 PSMA6P60900 246 aaKnown RBP20.51■□□□□ 0.87
VPS53-211ENST00000571805 GRK1Q15835 563 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 FAM209AQ5JX71 171 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 CLLU1Q5K131 121 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 SLC36A1Q7Z2H8 476 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 KCNK15Q9H427 330 aa20.51■□□□□ 0.87
VPS53-211ENST00000571805 ARPC4-TTLL3A0A0A6YYG9 625 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 PLSCR5A0PG75 271 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 TTLL8A6PVC2 850 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 SLC17A2O00624 439 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 PLPP3O14495 311 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 ADAM10O14672 748 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 OR6A2O95222 327 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 HNRNPKP61978 463 aaKnown RBP eCLIP20.5■□□□□ 0.87
VPS53-211ENST00000571805 GUCA2AQ02747 115 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 CCDC28AQ8IWP9 274 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 FAM3DQ96BQ1 224 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 WDR89Q96FK6 387 aaPredicted RBP20.5■□□□□ 0.87
VPS53-211ENST00000571805 GLTPQ9NZD2 209 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 COPS7AQ9UBW8 275 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 UBQLN2Q9UHD9 624 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 VCANP13611 3396 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 IGHV1OR21-1A0A087WYE8 117 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 CRYZL1O95825 349 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 IGHMP01871 453 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 FOLR1P15328 257 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 FAUP35544 74 aaKnown RBP20.5■□□□□ 0.87
VPS53-211ENST00000571805 ARL4DP49703 201 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 MFGE8Q08431 387 aaPredicted RBP20.5■□□□□ 0.87
VPS53-211ENST00000571805 TOR2AQ5JU69 321 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 SLC29A4Q7RTT9 530 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 BPHLQ86WA6 291 aaPredicted RBP20.5■□□□□ 0.87
VPS53-211ENST00000571805 OR4D10Q8NGI6 311 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 OR52B4Q8NGK2 314 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 OR11A1Q9GZK7 315 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 VN1R1Q9GZP7 353 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 TAS2R8Q9NYW2 309 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 PRUNE2Q8WUY3 3088 aa20.5■□□□□ 0.87
VPS53-211ENST00000571805 FER1L5A0AVI2 2057 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 KDM4BO94953 1096 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 WNT11O96014 354 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 CSF1P09603 554 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 CSF2RBP32927 897 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 RBMS2Q15434 407 aaKnown RBP20.49■□□□□ 0.87
VPS53-211ENST00000571805 RAB11BQ15907 218 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 YOD1Q5VVQ6 348 aaPredicted RBP20.49■□□□□ 0.87
VPS53-211ENST00000571805 D2HGDHQ8N465 521 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 TMA7Q9Y2S6 64 aaKnown RBP20.49■□□□□ 0.87
VPS53-211ENST00000571805 TRAV18A0A075B6X5 111 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 LOC100289279A0A1B0GTE1 492 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 MEN1O00255 615 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 AP2S1P53680 142 aaPredicted RBP20.49■□□□□ 0.87
VPS53-211ENST00000571805 RAP2BP61225 183 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 ADAM8P78325 824 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 GRINAQ7Z429 371 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 MDGA2Q7Z553 956 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 KRT77Q7Z794 578 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 DUSP19Q8WTR2 217 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 ASB5Q8WWX0 329 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 SLC25A28Q96A46 364 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 ABHD6Q9BV23 337 aa20.49■□□□□ 0.87
VPS53-211ENST00000571805 M0R233 179 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 SHOXO15266 292 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 CXCL2P19875 107 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 MAP2K6P52564 334 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 NXPH1P58417 271 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 C1orf189Q5VU69 101 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 CATSPERDQ86XM0 798 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 RELTQ969Z4 430 aa20.48■□□□□ 0.87
VPS53-211ENST00000571805 ZNF587Q96SQ5 575 aaPredicted RBP20.48■□□□□ 0.87
VPS53-211ENST00000571805 SLC17A5Q9NRA2 495 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms