RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FAM169BQ8N8A8 192 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 SYT14Q8NB59 555 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 BCL2L2Q92843 193 aaPredicted RBP18.03■□□□□ 0.48
VPS53-210ENST00000571456 WACQ9BTA9 647 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 PLA2G12AQ9BZM1 189 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 DCLRE1BQ9H816 532 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 USE1Q9NZ43 259 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 CRIM1Q9NZV1 1036 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 PLEKHA6Q9Y2H5 1048 aa18.03■□□□□ 0.48
VPS53-210ENST00000571456 SOCS2O14508 198 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 CTAG2O75638 210 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 IGFBP5P24593 272 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 GIPRP48546 466 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 UBE2NP61088 152 aaKnown RBP18.02■□□□□ 0.48
VPS53-210ENST00000571456 MRPS34P82930 218 aaKnown RBP18.02■□□□□ 0.48
VPS53-210ENST00000571456 ARF1P84077 181 aaKnown RBP18.02■□□□□ 0.48
VPS53-210ENST00000571456 LGALS3BPQ08380 585 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 TAB1Q15750 504 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 C3orf36Q3SXR2 165 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 TBRG1Q3YBR2 411 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 CLEC12AQ5QGZ9 265 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 SLC25A47Q6Q0C1 308 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 ZNF813Q6ZN06 617 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 OR8D4Q8NGM9 314 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 LINC01560Q8TB33 94 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 RASD2Q96D21 266 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 SLC25A19Q9HC21 320 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 TMEM38BQ9NVV0 291 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 FBXL3Q9UKT7 428 aa18.02■□□□□ 0.48
VPS53-210ENST00000571456 RIIAD1A6NNX1 92 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 ANKRD65E5RJM6 399 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 SOX14O95416 240 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 BAG2O95816 211 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 INHBBP09529 407 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 OR8G3PP0DMU2 310 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 CENPAP49450 140 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 ALDH3A2P51648 485 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 CRISP1P54107 249 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 RAD23AP54725 363 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 NR1H2P55055 460 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 FOXG1P55316 489 aaPredicted RBP18.01■□□□□ 0.47
VPS53-210ENST00000571456 DAG1Q14118 895 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 PGGHGQ32M88 737 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 ZNF771Q7L3S4 317 aaPredicted RBP18.01■□□□□ 0.47
VPS53-210ENST00000571456 WDFY1Q8IWB7 410 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 HIVEP2P31629 2446 aa18.01■□□□□ 0.47
VPS53-210ENST00000571456 SAC3D1A6NKF1 404 aa18■□□□□ 0.47
VPS53-210ENST00000571456 H0YHG0 523 aa18■□□□□ 0.47
VPS53-210ENST00000571456 RRP9O43818 475 aaKnown RBP18■□□□□ 0.47
VPS53-210ENST00000571456 KHDRBS3O75525 346 aaKnown RBP18■□□□□ 0.47
VPS53-210ENST00000571456 HEXAP06865 529 aa18■□□□□ 0.47
VPS53-210ENST00000571456 HIST1H1CP16403 213 aaKnown RBP18■□□□□ 0.47
VPS53-210ENST00000571456 ZNF3P17036 446 aa18■□□□□ 0.47
VPS53-210ENST00000571456 ELF3P78545 371 aaPredicted RBP18■□□□□ 0.47
VPS53-210ENST00000571456 CDK5Q00535 292 aa18■□□□□ 0.47
VPS53-210ENST00000571456 BEX5Q5H9J7 111 aa18■□□□□ 0.47
VPS53-210ENST00000571456 C9orf135Q5VTT2 229 aa18■□□□□ 0.47
VPS53-210ENST00000571456 FOXL2NBQ6ZUU3 175 aa18■□□□□ 0.47
VPS53-210ENST00000571456 WFDC11Q8NEX6 87 aa18■□□□□ 0.47
VPS53-210ENST00000571456 EME1Q96AY2 570 aa18■□□□□ 0.47
VPS53-210ENST00000571456 MBD6Q96DN6 1003 aa18■□□□□ 0.47
VPS53-210ENST00000571456 RACGAP1Q9H0H5 632 aa18■□□□□ 0.47
VPS53-210ENST00000571456 SYT4Q9H2B2 425 aa18■□□□□ 0.47
VPS53-210ENST00000571456 KCNN2Q9H2S1 579 aa18■□□□□ 0.47
VPS53-210ENST00000571456 SIAEQ9HAT2 523 aa18■□□□□ 0.47
VPS53-210ENST00000571456 CMC2Q9NRP2 79 aa18■□□□□ 0.47
VPS53-210ENST00000571456 SLC25A15Q9Y619 301 aa18■□□□□ 0.47
VPS53-210ENST00000571456 FKBP7Q9Y680 259 aa18■□□□□ 0.47
VPS53-210ENST00000571456 UBL3O95164 117 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 ALPLP05186 524 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 ANPEPP15144 967 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 PAICSP22234 425 aaKnown RBP17.99■□□□□ 0.47
VPS53-210ENST00000571456 POU1F1P28069 291 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 CDKN2AP42771 156 aaKnown RBP17.99■□□□□ 0.47
VPS53-210ENST00000571456 BLVRAP53004 296 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.99■□□□□ 0.47
VPS53-210ENST00000571456 GINS1Q14691 196 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 RCN1Q15293 331 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 TSC22D1Q15714 1073 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 ANKRD34AQ69YU3 496 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 LEG1Q6P5S2 330 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 ZBTB49Q6ZSB9 765 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 SLC22A24Q8N4F4 322 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 OR52E2Q8NGJ4 325 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 OR2T4Q8NH00 348 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 OR4K13Q8NH42 304 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 ZNF837Q96EG3 531 aaPredicted RBP17.99■□□□□ 0.47
VPS53-210ENST00000571456 SLC38A2Q96QD8 506 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 CIB1Q99828 191 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 GABARAPL3Q9BY60 117 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 NELFAQ9H3P2 528 aa17.99■□□□□ 0.47
VPS53-210ENST00000571456 ESRP2Q9H6T0 727 aaKnown RBP17.99■□□□□ 0.47
VPS53-210ENST00000571456 A6NNC1 897 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 THBDP07204 575 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 PTDSS1P48651 473 aaKnown RBP17.98■□□□□ 0.47
VPS53-210ENST00000571456 GLO1Q04760 184 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 SLC36A2Q495M3 483 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 PTCHD4Q6ZW05 846 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 ZBTB46Q86UZ6 589 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 WDR31Q8NA23 367 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms