RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 AUNIPQ9H7T9 357 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 DDX28Q9NUL7 540 aaKnown RBP18.18■□□□□ 0.5
CLN3-230ENST00000568076 NPIPA1Q9UND3 350 aa18.18■□□□□ 0.5
CLN3-230ENST00000568076 TEX51A0A1B0GUA7 166 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 A6NIZ1 184 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 GPR171O14626 319 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 GSTZ1O43708 216 aaPredicted RBP18.17■□□□□ 0.5
CLN3-230ENST00000568076 MAS1P04201 325 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 RAP1BP61224 184 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 RAP1AP62834 184 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 IFITM2Q01629 132 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 MFGE8Q08431 387 aaPredicted RBP18.17■□□□□ 0.5
CLN3-230ENST00000568076 EIF2B1Q14232 305 aaKnown RBP18.17■□□□□ 0.5
CLN3-230ENST00000568076 CLPPQ16740 277 aaPredicted RBP18.17■□□□□ 0.5
CLN3-230ENST00000568076 ZFP69Q49AA0 526 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 OR7E24Q6IFN5 339 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 TOMM5Q8N4H5 51 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 AGBL5Q8NDL9 886 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 MCHR2Q969V1 340 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 GTPBP2Q9BX10 602 aaKnown RBP18.17■□□□□ 0.5
CLN3-230ENST00000568076 CTDSPLO15194 276 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 TMEM127O75204 238 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 RAF1P04049 648 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 ARSBP15848 533 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 DAP3P51398 398 aaKnown RBP18.17■□□□□ 0.5
CLN3-230ENST00000568076 CCR9P51686 369 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 SLC26A10Q8NG04 563 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 OR2M3Q8NG83 312 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 OR5M1Q8NGP8 315 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 SMIM4Q8WVI0 70 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 SDHAF3Q9NRP4 125 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 ALKBH4Q9NXW9 302 aa18.17■□□□□ 0.5
CLN3-230ENST00000568076 NXT1Q9UKK6 140 aaKnown RBP18.17■□□□□ 0.5
CLN3-230ENST00000568076 NPIPB13A6NJU9 1138 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 NPIPB4C9JG80 1138 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 H0YC42 278 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 RAD1O60671 282 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 KLF7O75840 302 aaPredicted RBP18.16■□□□□ 0.5
CLN3-230ENST00000568076 OPN1LWP04000 364 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 DUSP3P51452 185 aaPredicted RBP18.16■□□□□ 0.5
CLN3-230ENST00000568076 RPS15P62841 145 aaKnown RBP18.16■□□□□ 0.5
CLN3-230ENST00000568076 CD83Q01151 205 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 MYBPHQ13203 477 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 TRA2AQ13595 282 aaKnown RBP eCLIP18.16■□□□□ 0.5
CLN3-230ENST00000568076 KRT77Q7Z794 578 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 SERPINA12Q8IW75 414 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 DND1Q8IYX4 353 aaKnown RBP18.16■□□□□ 0.5
CLN3-230ENST00000568076 GCDHQ92947 438 aaPredicted RBP18.16■□□□□ 0.5
CLN3-230ENST00000568076 C5orf34Q96MH7 638 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 FANCFQ9NPI8 374 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 B3GAT1Q9P2W7 334 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 GPN3Q9UHW5 284 aaPredicted RBP18.16■□□□□ 0.5
CLN3-230ENST00000568076 LRP12Q9Y561 859 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 CHCHD2Q9Y6H1 151 aaPredicted RBP18.16■□□□□ 0.5
CLN3-230ENST00000568076 CACNA1CQ13936 2221 aa18.16■□□□□ 0.5
CLN3-230ENST00000568076 IGHV1-45A0A0A0MS14 117 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 CALCBP10092 127 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 HOXD12P35452 270 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 SIGLEC14Q08ET2 396 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 KCTD18Q6PI47 426 aaPredicted RBP18.15■□□□□ 0.5
CLN3-230ENST00000568076 NHLRC1Q6VVB1 395 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 TMPRSS12Q86WS5 348 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 WDSUB1Q8N9V3 476 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 OR52N5Q8NH56 324 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 CAPSLQ8WWF8 208 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 MR1Q95460 341 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 SMOC1Q9H4F8 434 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 SERINC1Q9NRX5 453 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 B3GALT5Q9Y2C3 310 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 CENPBD1B2RD01 187 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 KLK3P07288 261 aaPredicted RBP18.15■□□□□ 0.5
CLN3-230ENST00000568076 FREM3P0C091 2139 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 CSRP1P21291 193 aaKnown RBP18.15■□□□□ 0.5
CLN3-230ENST00000568076 MAP2K6P52564 334 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 ASPHD2Q6ICH7 369 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 SLC23A3Q6PIS1 610 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 SYNPRQ8TBG9 265 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 RNF170Q96K19 258 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 EMC6Q9BV81 110 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 TP63Q9H3D4 680 aaPredicted RBP18.15■□□□□ 0.5
CLN3-230ENST00000568076 TMEM185BQ9H7F4 350 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 GTF2A1LQ9UNN4 478 aa18.15■□□□□ 0.5
CLN3-230ENST00000568076 PTRH2Q9Y3E5 179 aaKnown RBP18.15■□□□□ 0.5
CLN3-230ENST00000568076 ANXA2P2A6NMY6 339 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 SRSF10O75494 262 aaKnown RBP18.14■□□□□ 0.49
CLN3-230ENST00000568076 ANXA2P07355 339 aaKnown RBP18.14■□□□□ 0.49
CLN3-230ENST00000568076 COX6A1P12074 109 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 RIDAP52758 137 aaKnown RBP18.14■□□□□ 0.49
CLN3-230ENST00000568076 MC2RQ01718 297 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 PLA2G7Q13093 441 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 KLF9Q13886 244 aaPredicted RBP18.14■□□□□ 0.49
CLN3-230ENST00000568076 PRAMEF20Q5VT98 475 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 LINGO2Q7L985 606 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 CATSPERDQ86XM0 798 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 ZNF454Q8N9F8 522 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 TSEN15Q8WW01 171 aaKnown RBP18.14■□□□□ 0.49
CLN3-230ENST00000568076 IMMP1LQ96LU5 166 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 FBXL3Q9UKT7 428 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 FOXJ3Q9UPW0 622 aa18.14■□□□□ 0.49
CLN3-230ENST00000568076 A0A1W2PNV4 684 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms