RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 LRRC69Q6ZNQ3 347 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 ESPNLQ6ZVH7 1005 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 H1FNTQ75WM6 255 aaPredicted RBP5.62□□□□□ -1.51
CLN3-223ENST00000566472 CPEB2Q7Z5Q1 589 aaKnown RBP5.62□□□□□ -1.51
CLN3-223ENST00000566472 WDR5BQ86VZ2 330 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 GLB1L2Q8IW92 636 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 CDH26Q8IXH8 852 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 UBALD2Q8IYN6 164 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 PRSS58Q8IYP2 241 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 SLC7A5P1Q8MH63 180 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 C9orf62Q8N4C0 152 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 SPICQ8N5J4 248 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 NKAIN3Q8N8D7 197 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 DTX3Q8N9I9 347 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 SLC26A10Q8NG04 563 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 OR6M1Q8NGM8 313 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 ASB13Q8WXK3 278 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 PTX4Q96A99 478 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 PHF21AQ96BD5 680 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 FOXRED1Q96CU9 486 aaPredicted RBP5.62□□□□□ -1.51
CLN3-223ENST00000566472 GPR137Q96N19 417 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 KCNK17Q96T54 332 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 WDR77Q9BQA1 342 aaPredicted RBP5.62□□□□□ -1.51
CLN3-223ENST00000566472 ABHD6Q9BV23 337 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 MOB1AQ9H8S9 216 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 SCPEP1Q9HB40 452 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 TMEM165Q9HC07 324 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 GPN1Q9HCN4 374 aaPredicted RBP5.62□□□□□ -1.51
CLN3-223ENST00000566472 SERINC1Q9NRX5 453 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 PLSCR3Q9NRY6 295 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 CKLFQ9UBR5 152 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 ZNF107Q9UII5 783 aaPredicted RBP5.62□□□□□ -1.51
CLN3-223ENST00000566472 SCP2D1Q9UJQ7 156 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 HHLA2Q9UM44 414 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 CLEC4AQ9UMR7 237 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 DHDHQ9UQ10 334 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 B3GALT5Q9Y2C3 310 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 B3GALT1Q9Y5Z6 326 aa5.62□□□□□ -1.51
CLN3-223ENST00000566472 LY6G6EA0A0G2JKS1 128 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 LOC390937A0A1W2PQ73 354 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 GGT3PA6NGU5 568 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 LIPT2A6NK58 231 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 MS4A18H0YCH9 400 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 H7C417 338 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 SOX1O00570 391 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 FABP7O15540 132 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 CTAG2O75638 210 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 RBBP9O75884 186 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ALX3O95076 343 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 NDUFB6O95139 128 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 PLGP00747 810 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 MELTFP08582 738 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 FBXO45P0C2W1 286 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 FGF5P12034 268 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 NR2C1P13056 603 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 GABRA1P14867 456 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 IFNGR1P15260 489 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 FOSL2P15408 326 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 C4BPBP20851 252 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ADH6P28332 368 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 CCKBRP32239 447 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 CCR6P51684 374 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ZNF41P51814 821 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 CLDN12P56749 244 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 FBXW4P57775 412 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ADAMTS20P59510 1910 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ACTBP60709 375 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ACTG1P63261 375 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 HSF1Q00613 529 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 FOXF1Q12946 379 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 TRA2AQ13595 282 aaKnown RBP eCLIP5.61□□□□□ -1.51
CLN3-223ENST00000566472 MELKQ14680 651 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 OR7A5Q15622 319 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ST3GAL2Q16842 350 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 PLPPR5Q32ZL2 321 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 MS4A18Q3C1V0 323 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 Q5BKY6 102 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 C1orf100Q5SVJ3 147 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 TMEM244Q5VVB8 128 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 PMS2CLQ68D20 193 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 TMEM225Q6GV28 225 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 LAMTOR1Q6IAA8 161 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 POMZP3Q6PJE2 187 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 LYPD8Q6UX82 237 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 SEZ6L2Q6UXD5 910 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 GLDNQ6ZMI3 551 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 ZNF574Q6ZN55 896 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 SLC35D2Q76EJ3 337 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 PRSS45Q7RTY3 260 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 IZUMO1Q8IYV9 350 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 DNAAF1Q8NEP3 725 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 OR11G2Q8NGC1 345 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 OR11H7Q8NGC8 314 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 OR10AC1Q8NH08 325 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 CEP76Q8TAP6 659 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 SAP25Q8TEE9 199 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ZNF431Q8TF32 576 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 SLC25A43Q8WUT9 341 aaPredicted RBP5.61□□□□□ -1.51
CLN3-223ENST00000566472 RNF133Q8WVZ7 376 aa5.61□□□□□ -1.51
CLN3-223ENST00000566472 ORAI1Q96D31 301 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms