RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 FGF20Q9NP95 211 aaPredicted RBP11.33□□□□□ -0.6
CLK3-214ENST00000564096 PAK1IP1Q9NWT1 392 aaPredicted RBP11.33□□□□□ -0.6
CLK3-214ENST00000564096 SH3BGRL2Q9UJC5 107 aa11.33□□□□□ -0.6
CLK3-214ENST00000564096 TINAGQ9UJW2 476 aa11.33□□□□□ -0.6
CLK3-214ENST00000564096 ERGIC3Q9Y282 383 aa11.33□□□□□ -0.6
CLK3-214ENST00000564096 EXOGQ9Y2C4 368 aaKnown RBP11.33□□□□□ -0.6
CLK3-214ENST00000564096 ZNF407Q9C0G0 2248 aa11.33□□□□□ -0.6
CLK3-214ENST00000564096 MAP1BP46821 2468 aaKnown RBP11.33□□□□□ -0.6
CLK3-214ENST00000564096 FREM3P0C091 2139 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 DAPL1A0PJW8 107 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 E9PLN8 166 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 ZNF670-ZNF695F2Z2N8 137 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 RPL36A-HNRNPH2H7BZ11 118 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 APOL3O95236 402 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 IGHA1P01876 353 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 MT-ND2P03891 347 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 STSP08842 583 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 SPARCP09486 303 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 OR2T7P0C7T2 308 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 ATP6V1B1P15313 513 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 MSR1P21757 451 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 OPRM1P35372 400 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 CA7P43166 264 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 ACTA2P62736 377 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 ACTG2P63267 376 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 MRPS34P82930 218 aaKnown RBP11.32□□□□□ -0.6
CLK3-214ENST00000564096 TBCEQ15813 527 aaPredicted RBP11.32□□□□□ -0.6
CLK3-214ENST00000564096 CEACAM16Q2WEN9 425 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 TSPO2Q5TGU0 170 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 RNLSQ5VYX0 342 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 FBXW9Q5XUX1 488 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 TFAP2EQ6VUC0 442 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 SHFQ7M4L6 423 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 NUFIP2Q7Z417 695 aaKnown RBP11.32□□□□□ -0.6
CLK3-214ENST00000564096 ATCAYQ86WG3 371 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 WDFY1Q8IWB7 410 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 ACBD7Q8N6N7 88 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 ZNF454Q8N9F8 522 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 SLC26A10Q8NG04 563 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 OR4F15Q8NGB8 312 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 OR2T27Q8NH04 317 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 FOXB1Q99853 325 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 VKORC1Q9BQB6 163 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 MND1Q9BWT6 205 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 CDADC1Q9BWV3 514 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 CDCA4Q9BXL8 241 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 NELFAQ9H3P2 528 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 WDR76Q9H967 626 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 MARCH7Q9H992 704 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 GPR35Q9HC97 309 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 ERVK-18Q9QC07 812 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 LAMP5Q9UJQ1 280 aa11.32□□□□□ -0.6
CLK3-214ENST00000564096 RALYQ9UKM9 306 aaKnown RBP11.32□□□□□ -0.6
CLK3-214ENST00000564096 IGKV1D-43A0A0B4J1Z2 117 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 TVP23AA6NH52 213 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 C12orf71A8MTZ7 269 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 ZNF99A8MXY4 864 aaPredicted RBP11.31□□□□□ -0.6
CLK3-214ENST00000564096 SELENOFO60613 162 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 CLPTM1O96005 669 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 IGHV3-9P01782 118 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 GLI4P10075 376 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 CTSSP25774 331 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 HOXC12P31275 282 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 KIR2DL2P43627 348 aaPredicted RBP11.31□□□□□ -0.6
CLK3-214ENST00000564096 CDH15P55291 814 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 TGFBR3Q03167 851 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 ETFDHQ16134 617 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 SLC18B1Q6NT16 456 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 LRFN4Q6PJG9 635 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 B3GLCTQ6Y288 498 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 TMPRSS11AQ6ZMR5 421 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 C3P1Q6ZMU1 363 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 FOXL2NBQ6ZUU3 175 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 SEM1Q6ZVN7 128 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.31□□□□□ -0.6
CLK3-214ENST00000564096 FAM220AQ7Z4H9 259 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.31□□□□□ -0.6
CLK3-214ENST00000564096 TIGD4Q8IY51 512 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 KLHL36Q8N4N3 616 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 ZNF511Q8NB15 262 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 ASB17Q8WXJ9 295 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 KCNN2Q9H2S1 579 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 PIGMQ9H3S5 423 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 POLE4Q9NR33 117 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 SLC7A10Q9NS82 523 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 TMEM38BQ9NVV0 291 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 DNAJC13O75165 2243 aa11.31□□□□□ -0.6
CLK3-214ENST00000564096 TLN1Q9Y490 2541 aaKnown RBP11.31□□□□□ -0.6
CLK3-214ENST00000564096 SPTA1P02549 2419 aa11.3□□□□□ -0.6
CLK3-214ENST00000564096 TMEM129A0AVI4 362 aa11.3□□□□□ -0.6
CLK3-214ENST00000564096 DVL2O14641 736 aa11.3□□□□□ -0.6
CLK3-214ENST00000564096 TNFSF13O75888 250 aa11.3□□□□□ -0.6
CLK3-214ENST00000564096 IL18BPO95998 194 aa11.3□□□□□ -0.6
CLK3-214ENST00000564096 SMIM18P0DKX4 95 aa11.3□□□□□ -0.6
CLK3-214ENST00000564096 CD8BP10966 210 aa11.3□□□□□ -0.6
CLK3-214ENST00000564096 MPGP29372 298 aa11.3□□□□□ -0.6
CLK3-214ENST00000564096 C21orf33P30042 268 aaPredicted RBP11.3□□□□□ -0.6
CLK3-214ENST00000564096 CEACAM8P31997 349 aaPredicted RBP11.3□□□□□ -0.6
CLK3-214ENST00000564096 NTF4P34130 210 aa11.3□□□□□ -0.6
CLK3-214ENST00000564096 LSM6P62312 80 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms