RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SERPINA5P05154 406 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 IGFBP1P08833 259 aaPredicted RBP10□□□□□ -0.81
CCDC88C-208ENST00000554165 NR4A1P22736 598 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 ERFP50548 548 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 SMIM11AP58511 58 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 MRPS34P82930 218 aaKnown RBP10□□□□□ -0.81
CCDC88C-208ENST00000554165 SNTB2Q13425 540 aaKnown RBP10□□□□□ -0.81
CCDC88C-208ENST00000554165 DAG1Q14118 895 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 TAF11Q15544 211 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 PGBD2Q6P3X8 592 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 UGT2A3Q6UWM9 527 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 PTCHD4Q6ZW05 846 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 HDDC2Q7Z4H3 204 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 LRP11Q86VZ4 500 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 ARHGAP24Q8N264 748 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 SVOPLQ8N434 492 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 OR4F15Q8NGB8 312 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 OR9Q2Q8NGE9 314 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 OR4C15Q8NGM1 316 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 NANOS1Q8WY41 292 aaKnown RBP10□□□□□ -0.81
CCDC88C-208ENST00000554165 COX4I2Q96KJ9 171 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF570Q96NI8 536 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 RBP7Q96R05 134 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 ALG12Q9BV10 488 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 OR51B6Q9H340 312 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 SIAEQ9HAT2 523 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 EMC7Q9NPA0 242 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 NRIP3Q9NQ35 241 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 GRHPRQ9UBQ7 328 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 PRPF19Q9UMS4 504 aaKnown RBP10□□□□□ -0.81
CCDC88C-208ENST00000554165 LYVE1Q9Y5Y7 322 aa10□□□□□ -0.81
CCDC88C-208ENST00000554165 NSD1Q96L73 2696 aaPredicted RBP10□□□□□ -0.81
CCDC88C-208ENST00000554165 ABCA1O95477 2261 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 ZFHX3Q15911 3703 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 A0A1W2PPL8 197 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 A6NIZ1 184 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 RNF223E7ERA6 249 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 H7C417 338 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 TNFRSF11BO00300 401 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 MPZL1O95297 269 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 FARS2O95363 451 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 LY6G6DO95868 133 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 GPANK1O95872 356 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 FAM157BP0CG42 384 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 FOSL1P15407 271 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 CTLA4P16410 223 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF32P17041 273 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 NPR2P20594 1047 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 APEX1P27695 318 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 LAP3P28838 519 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 CDKN2AP42771 156 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 MAGEA2P43356 314 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 GSSP48637 474 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 RAP1BP61224 184 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 RAP1AP62834 184 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 KRR1Q13601 381 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 ENDOGQ14249 297 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 ANKDD1AQ495B1 522 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 PABPC1L2AQ5JQF8 200 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 THEM4Q5T1C6 240 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 DNM1P46Q6ZS02 220 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF525Q8N782 197 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 SLC30A7Q8NEW0 376 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 NUP37Q8NFH4 326 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 AKR7LQ8NHP1 331 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 SAMD8Q96LT4 415 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 TSSK2Q96PF2 358 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 SORCS2Q96PQ0 1159 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 BTBD10Q9BSF8 475 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 BDH2Q9BUT1 245 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 MRPL37Q9BZE1 423 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 WNT5BQ9H1J7 359 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 C1orf21Q9H246 121 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 RERGLQ9H628 205 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 DENND2DQ9H6A0 471 aaPredicted RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 SMURF2Q9HAU4 748 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 MOV10Q9HCE1 1003 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 MYEF2Q9P2K5 600 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 STX18Q9P2W9 335 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 NAV3Q8IVL0 2385 aa9.99□□□□□ -0.81
CCDC88C-208ENST00000554165 LOC100509620A0A075B734 347 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 IGHV4-30-2A0A087WSY4 118 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 PRSS37A4D1T9 235 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 DCTN6O00399 190 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 GYG2O15488 501 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 PAX7P23759 505 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 FPR3P25089 353 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 SDHAP31040 664 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 HMGA2P52926 109 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 NUDT6P53370 316 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 ERVS71-1P61550 626 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 PSG4Q00888 419 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 CHRNB3Q05901 458 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 RAB35Q15286 201 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 FAM27BQ5VT28 67 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 FAM205BPQ63HN1 556 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 ZNF770Q6IQ21 691 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 TMEM53Q6P2H8 277 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 PGM2L1Q6PCE3 622 aa9.98□□□□□ -0.81
CCDC88C-208ENST00000554165 SMARCD3Q6STE5 483 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms