RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 BIDP55957 195 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 SNTB1Q13884 538 aaKnown RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 MELKQ14680 651 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 SLC17A1Q14916 467 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 EEF1A1P5Q5VTE0 462 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 ABLIM2Q6H8Q1 611 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 FCRLAQ7L513 359 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 FGD2Q7Z6J4 655 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 SPARTQ8N0X7 666 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 CIARTQ8N365 385 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 POMGNT2Q8NAT1 580 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 PROKR2Q8NFJ6 384 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 OR9K2Q8NGE7 335 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 OR9Q1Q8NGQ5 310 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 LGALS12Q96DT0 336 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 RBP7Q96R05 134 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 MYCBPQ99417 103 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 TEAD3Q99594 435 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 TIMP4Q99727 224 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 PRRG4Q9BZD6 226 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 CLEC4MQ9H2X3 399 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 FGF20Q9NP95 211 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 RPRD1BQ9NQG5 326 aaKnown RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 DIMT1Q9UNQ2 313 aaKnown RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 EXOSC1Q9Y3B2 195 aaKnown RBP12.82□□□□□ -0.36
SHMT2-208ENST00000553868 LIPGQ9Y5X9 500 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 MPDZO75970 2070 aa12.82□□□□□ -0.36
SHMT2-208ENST00000553868 OR14I1A6ND48 311 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 CCDC182A6NF36 153 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 ZNF814B7Z6K7 855 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 H0YC42 278 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 GPR171O14626 319 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 CYTIPO60759 359 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 GLCEO94923 617 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 MT-ND2P03891 347 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 CLRN1P58418 232 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 GGTLC2Q14390 218 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 SF3B4Q15427 424 aaKnown RBP eCLIP12.81□□□□□ -0.368e-12■■■■■ 35.4
SHMT2-208ENST00000553868 TBCEQ15813 527 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-208ENST00000553868 RNLSQ5VYX0 342 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 GTF2IRD2BQ6EKJ0 949 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 KCTD8Q6ZWB6 473 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 CREB3L2Q70SY1 520 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 GTF2IRD2Q86UP8 949 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 SIAH3Q8IW03 269 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 OR52I1Q8NGK6 324 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 LILRB4Q8NHJ6 448 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 INTS12Q96CB8 462 aaKnown RBP12.81□□□□□ -0.36
SHMT2-208ENST00000553868 MBD6Q96DN6 1003 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 SLC25A44Q96H78 314 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-208ENST00000553868 WDYHV1Q96HA8 205 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 UCN2Q96RP3 112 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 HCAR1Q9BXC0 346 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 CDCA4Q9BXL8 241 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 SYT4Q9H2B2 425 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 INPP5EQ9NRR6 644 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 PLSCR2Q9NRY7 297 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 ASB6Q9NWX5 421 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 MED29Q9NX70 200 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 EMC3Q9P0I2 261 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 KLHL9Q9P2J3 617 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 KLHL13Q9P2N7 655 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 CAMK2AQ9UQM7 478 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 RCE1Q9Y256 329 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 ERGIC3Q9Y282 383 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 EXOGQ9Y2C4 368 aaKnown RBP12.81□□□□□ -0.36
SHMT2-208ENST00000553868 COMMD3-BMI1R4GMX3 469 aa12.81□□□□□ -0.36
SHMT2-208ENST00000553868 IGHV3-15A0A0B4J1V0 119 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 SLC22A23A1A5C7 686 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 TRMUO75648 421 aaKnown RBP12.8□□□□□ -0.36
SHMT2-208ENST00000553868 TPOP07202 933 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 HTR1AP08908 422 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 FCGR2AP12318 317 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 JUNBP17275 347 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-208ENST00000553868 GSTT1P30711 240 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 TTKP33981 857 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 CLDN17P56750 224 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 ACTC1P68032 377 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 ACTA1P68133 377 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 PIGFQ07326 219 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 RASGEF1BQ0VAM2 473 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 RNPS1Q15287 305 aaKnown RBP12.8□□□□□ -0.36
SHMT2-208ENST00000553868 DEFB113Q30KQ7 82 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 KRTCAP3Q53RY4 240 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 THEM4Q5T1C6 240 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 NHLRC1Q6VVB1 395 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 GHDCQ8N2G8 530 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 NOXO1Q8NFA2 376 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 OR6K6Q8NGW6 343 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 SGCDQ92629 289 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 MRPL48Q96GC5 212 aaKnown RBP12.8□□□□□ -0.36
SHMT2-208ENST00000553868 TXNDC15Q96J42 360 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 SIGLEC11Q96RL6 698 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 KCNK17Q96T54 332 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 CNN2Q99439 309 aaKnown RBP12.8□□□□□ -0.36
SHMT2-208ENST00000553868 RHNO1Q9BSD3 238 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 PRDM14Q9GZV8 571 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 SRA1Q9HD15 236 aaKnown RBP12.8□□□□□ -0.36
SHMT2-208ENST00000553868 KCNJ16Q9NPI9 418 aa12.8□□□□□ -0.36
SHMT2-208ENST00000553868 SPRR3Q9UBC9 169 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms