RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ATXN7L3Q14CW9 347 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 RAB35Q15286 201 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 RBBP5Q15291 538 aaKnown RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 CHI3L2Q15782 390 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 ZIC1Q15915 447 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 LINC01620Q4KN68 170 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 MUC21Q5SSG8 566 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 ARMC12Q5T9G4 340 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 OR8G2PQ6IF36 304 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 Q6ZSR9 355 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 COX15Q7KZN9 410 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 STRADAQ7RTN6 431 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 CEACAM19Q7Z692 300 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF547Q8IVP9 402 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 VSTM4Q8IW00 320 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 TMEM123Q8N131 208 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 RFLNBQ8N5W9 214 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 CLDN19Q8N6F1 224 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 C3orf56Q8N813 242 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 MDS2Q8NDY4 140 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 NFAM1Q8NET5 270 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 OR9K2Q8NGE7 335 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 OR5D13Q8NGL4 314 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 CNIH3Q8TBE1 160 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 SPPL2AQ8TCT8 520 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 NAT14Q8WUY8 206 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 SH3YL1Q96HL8 342 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 C7orf34Q96L11 122 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 TSNARE1Q96NA8 513 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 NPY6RQ99463 290 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 CCL19Q99731 98 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 TTYH2Q9BSA4 534 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 SLC25A51Q9H1U9 297 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 NT5DC2Q9H857 520 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 MED20Q9H944 212 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 Q9HAA7 133 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 WDR41Q9HAD4 459 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 ESM1Q9NQ30 184 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 UFSP2Q9NUQ7 469 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 MRPL39Q9NYK5 338 aaKnown RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 CTSFQ9UBX1 484 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 OR12D3Q9UGF7 316 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 GNPTGQ9UJJ9 305 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 PIGLQ9Y2B2 252 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 GSTK1Q9Y2Q3 226 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 KLHDC2Q9Y2U9 406 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 FAM215AQ9Y5M1 114 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 DSCAMO60469 2012 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 PCM1Q15154 2024 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 PHF3Q92576 2039 aaKnown RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 SCN2AQ99250 2005 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF407Q9C0G0 2248 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 DYNC2H1Q8NCM8 4307 aaKnown RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 FREM1Q5H8C1 2179 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 ALPK2Q86TB3 2170 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 CADP27708 2225 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 ROS1P08922 2347 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 TRAV26-1A0A087WT03 109 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 A0A0A6YYD4 124 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 NSG1A0A0A6YYJ2 146 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 IGHV3-20A0A0C4DH32 117 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 BTBD17A6NE02 478 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 MFSD2BA6NFX1 497 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PMS2P5A8MQ11 134 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PRR23D1E9PI22 279 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 BTN3A3O00478 584 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 LSM1O15116 133 aaKnown RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 SERPINA7P05543 415 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 FCGR3AP08637 254 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PAEPP09466 180 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 ALOX5P09917 674 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PRSS56P0CW18 603 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PRR23D2P0DMB1 279 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 ERVK-10P10266 1014 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 COX6A1P12074 109 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 UCP1P25874 307 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 TEAD1P28347 426 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PRDX3P30048 256 aaKnown RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 NSG1P42857 185 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 FNTAP49354 379 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 NANOS2P60321 138 aaKnown RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 CSNK2BP67870 215 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 CYCSP99999 105 aaKnown RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 COX10Q12887 443 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 IHHQ14623 411 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 TMEM187Q14656 261 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 SYPL1Q16563 259 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 CLEC12BQ2HXU8 276 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF718Q3SXZ3 478 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF672Q499Z4 452 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 CYBRD1Q53TN4 286 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 C2CD6Q53TS8 623 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 BRMS1LQ5PSV4 323 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 FAM182AQ5T1J6 154 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PRAMEF20Q5VT98 475 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 LRRC66Q68CR7 880 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PYHIN1Q6K0P9 492 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 SLC25A25Q6KCM7 469 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 RHBDD2Q6NTF9 364 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 FAM173BQ6P4H8 233 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms