RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 IGLV3-10A0A075B6K4 115 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TSPAN11A1L157 253 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 HMGN4O00479 90 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF208O43345 1280 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 SNAPINO95295 136 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 AHSA1O95433 338 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OPN1LWP04000 364 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 HNRNPA1P09651 372 aaKnown RBP eCLIP5□□□□□ -1.61
LIMA1-203ENST00000547825 AKAIN1P0CW23 69 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 FAHP16930 419 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 PI3P19957 117 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 CD80P33681 288 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 CCR2P41597 374 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 EBPQ15125 230 aaKnown RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 LINC00303Q3SY05 128 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 CLLU1Q5K131 121 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 MRPL2Q5T653 305 aaKnown RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 AVPI1Q5T686 147 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 OR7E24Q6IFN5 339 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ARHGAP11AQ6P4F7 1023 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 GRASPQ7Z6J2 395 aaPredicted RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 NRROSQ86YC3 692 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 FAM219AQ8IW50 185 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 WDSUB1Q8N9V3 476 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TTLQ8NG68 377 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 MARC2Q969Z3 335 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TM4SF18Q96CE8 201 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 PDXPQ96GD0 296 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ACTRT3Q9BYD9 372 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TBL1XR1Q9BZK7 514 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM38AQ9H6F2 299 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 SFXN1Q9H9B4 322 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 HRASLSQ9HDD0 168 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 SLC22A11Q9NSA0 550 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 HCFC1R1Q9NWW0 138 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ABRACLQ9P1F3 81 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ING1Q9UK53 422 aaPredicted RBP5□□□□□ -1.61
LIMA1-203ENST00000547825 FBXL4Q9UKA2 621 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 CAMK2AQ9UQM7 478 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 SLC35A3Q9Y2D2 325 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 ADAM18Q9Y3Q7 739 aa5□□□□□ -1.61
LIMA1-203ENST00000547825 K7ESM1 405 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SELENOFO60613 162 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SRMP19623 302 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 CR2P20023 1033 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 CDK2P24941 298 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 HTR1FP30939 366 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 PDX1P52945 283 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 RBMS2Q15434 407 aaKnown RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 TPGS2Q68CL5 300 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 FAM71E1Q6IPT2 247 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 Q6ZTK2 550 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 KDM8Q8N371 416 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 PNLDC1Q8NA58 520 aaKnown RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 C2orf15Q8WU43 125 aaKnown RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 NEURL3Q96EH8 262 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 PHB2Q99623 299 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 CMSS1Q9BQ75 279 aaKnown RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SULT4A1Q9BR01 284 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SOX7Q9BT81 388 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 PHF7Q9BWX1 381 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SCPEP1Q9HB40 452 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 Q9N2J8 555 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 MEPEQ9NQ76 525 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 DLL4Q9NR61 685 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 TAS2R8Q9NYW2 309 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 PTTG3PQ9NZH4 202 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 FTSJ1Q9UET6 329 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 POMT2Q9UKY4 750 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 MEMO1Q9Y316 297 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 MN1Q10571 1320 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 ATG2BQ96BY7 2078 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 NAP1L6A6NFF2 107 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 PYCARD-AS1I3L0S3 204 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 GPR31O00270 319 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 TMPRSS11DO60235 418 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 NDUFB2O95178 105 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 WDPCPO95876 746 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 CPT2P23786 658 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 NR0B1P51843 470 aaKnown RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 ACTBP60709 375 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 ARF3P61204 181 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SNRPEP62304 92 aaKnown RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 ACTG1P63261 375 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 S100A12P80511 92 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 ARF1P84077 181 aaKnown RBP4.99□□□□□ -1.61
LIMA1-203ENST00000547825 CBFBQ13951 182 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 ERV3-1Q14264 604 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 MELKQ14680 651 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 NR0B2Q15466 257 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 GGTA1PQ4G0N0 100 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 AKR1C8PQ5T2L2 129 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 C3orf33Q6P1S2 294 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM71Q6P5X7 295 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 FAM122BQ7Z309 247 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 GDF7Q7Z4P5 450 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 GPAT4Q86UL3 456 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 TPRA1Q86W33 373 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 CBLN2Q8IUK8 224 aa4.99□□□□□ -1.61
LIMA1-203ENST00000547825 SAMD14Q8IZD0 417 aaPredicted RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms