RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PPP1R3BQ86XI6 285 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 CMTM4Q8IZR5 234 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 ZNF676Q8N7Q3 588 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 ZFAND1Q8TCF1 268 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 UBASH3BQ8TF42 649 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 DUSP19Q8WTR2 217 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 SLC25A43Q8WUT9 341 aaPredicted RBP8.88□□□□□ -0.99
SS18-205ENST00000542420 NXPE2Q96DL1 559 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 OR6C1Q96RD1 312 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 UTP23Q9BRU9 249 aaKnown RBP8.88□□□□□ -0.99
SS18-205ENST00000542420 TSPAN10Q9H1Z9 355 aaPredicted RBP8.88□□□□□ -0.99
SS18-205ENST00000542420 TAS2R8Q9NYW2 309 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 STEAP1Q9UHE8 339 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 AUP1Q9Y679 476 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 REV3LO60673 3130 aa8.88□□□□□ -0.99
SS18-205ENST00000542420 A0A087WZY1 265 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 A0A0A6YYH2 397 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 LOC102725191A0A1B0GVB3 256 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 A0A1B0GVI7 797 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 A0A1W2PQM1 296 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 CDC14CA4D256 554 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 A6NJ64 397 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 LANCL1O43813 399 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 SERPINI2O75830 405 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 KRT33AO76009 404 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 CD63P08962 238 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 CSRP1P21291 193 aaKnown RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 OR52N5Q8NH56 324 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 CEP76Q8TAP6 659 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 SLC25A38Q96DW6 304 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 TSSK2Q96PF2 358 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 ZNF587Q96SQ5 575 aaPredicted RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 KCNK17Q96T54 332 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 SPSB2Q99619 263 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 GHITMQ9H3K2 345 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 RANGRFQ9HD47 186 aaPredicted RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 SERINC1Q9NRX5 453 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 MCUBQ9NWR8 336 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 FBXL3Q9UKT7 428 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 ASXL3Q9C0F0 2248 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 TRBV11-1A0A0K0K1C0 115 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 ACOD1A6NK06 481 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 TMEM200CA6NKL6 621 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 ANXA2P2A6NMY6 339 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 ZNF593O00488 134 aaPredicted RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 MAGEB4O15481 346 aaPredicted RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 KHDRBS3O75525 346 aaKnown RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 DKK1O94907 266 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 CD2P06729 351 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 ANXA2P07355 339 aaKnown RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 FOSL2P15408 326 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 ACHEP22303 614 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 STOMP27105 288 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 EIF1P41567 113 aaKnown RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 KIR3DL2P43630 455 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 DHPSP49366 369 aaPredicted RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 MECP2P51608 486 aaKnown RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 AGFG1P52594 562 aaKnown RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 CCL7P80098 99 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 GUSBP11Q6P575 273 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 LYPD4Q6UWN0 246 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 ZNF704Q6ZNC4 412 aaPredicted RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 CATSPERDQ86XM0 798 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 GALNT11Q8NCW6 608 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 THEM6Q8WUY1 208 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 FCAMRQ8WWV6 532 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 PTX4Q96A99 478 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 CCDC74BQ96LY2 380 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 HYLS1Q96M11 299 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 UQCC2Q9BRT2 126 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 TTTY10Q9BZA0 68 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 MRPL22Q9NWU5 206 aaKnown RBP8.87□□□□□ -0.99
SS18-205ENST00000542420 SLCO1C1Q9NYB5 712 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 OR5V1Q9UGF6 321 aa8.87□□□□□ -0.99
SS18-205ENST00000542420 RALGAPA1Q6GYQ0 2036 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 TVP23AA6NH52 213 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 NPIPA5E9PKD4 350 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 MS4A18H0YCH9 400 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SULT1C2O00338 296 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SIGLEC6O43699 453 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 PRKNO60260 465 aaPredicted RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 SRSF10O75494 262 aaKnown RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 SYPP08247 313 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 NR2C1P13056 603 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 CCKBRP32239 447 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 FAUP35544 74 aaKnown RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 GDNFP39905 211 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 ZNF41P51814 821 aaPredicted RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 DGCR2P98153 550 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 FAPQ12884 760 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SNTB2Q13425 540 aaKnown RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 MS4A18Q3C1V0 323 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SIAH3Q8IW03 269 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 PRSS35Q8N3Z0 413 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 SLC25A36Q96CQ1 311 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 KLHDC3Q9BQ90 382 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 CACNG6Q9BXT2 260 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 RANBP3Q9H6Z4 567 aaPredicted RBP8.86□□□□□ -0.99
SS18-205ENST00000542420 ELOVL3Q9HB03 270 aa8.86□□□□□ -0.99
SS18-205ENST00000542420 MYOTQ9UBF9 498 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms