RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 TMEM53Q6P2H8 277 aa3.62□□□□□ -1.83
PRKDC-208ENST00000536710 SSX9Q7RTT3 188 aa3.62□□□□□ -1.83
PRKDC-208ENST00000536710 GABRG1Q8N1C3 465 aa3.62□□□□□ -1.83
PRKDC-208ENST00000536710 BPIFCQ8NFQ6 507 aa3.62□□□□□ -1.83
PRKDC-208ENST00000536710 TSEN15Q8WW01 171 aaKnown RBP3.62□□□□□ -1.83
PRKDC-208ENST00000536710 NRGNQ92686 78 aa3.62□□□□□ -1.83
PRKDC-208ENST00000536710 ASB9Q96DX5 294 aa3.62□□□□□ -1.83
PRKDC-208ENST00000536710 CDC42EP4Q9H3Q1 356 aaKnown RBP3.62□□□□□ -1.83
PRKDC-208ENST00000536710 CCNB1IP1Q9NPC3 277 aa3.62□□□□□ -1.83
PRKDC-208ENST00000536710 ZNF331Q9NQX6 463 aaPredicted RBP3.62□□□□□ -1.83
PRKDC-208ENST00000536710 C20orf96Q9NUD7 363 aaPredicted RBP3.62□□□□□ -1.83
PRKDC-208ENST00000536710 MRPS18BQ9Y676 258 aaKnown RBP3.62□□□□□ -1.83
PRKDC-208ENST00000536710 MAP3K15Q6ZN16 1313 aa3.62□□□□□ -1.83
PRKDC-208ENST00000536710 WDR19Q8NEZ3 1342 aa3.62□□□□□ -1.83
PRKDC-208ENST00000536710 TRAV39A0A0B4J263 110 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 NKX2-6A6NCS4 301 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 NDUFAB1O14561 156 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 UTS2O95399 124 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 C6orf47O95873 294 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 PLEKP08567 350 aaPredicted RBP3.61□□□□□ -1.83
PRKDC-208ENST00000536710 OR8G3PP0DMU2 310 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 SMIM10L1P0DMW3 83 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 BCKDHBP21953 392 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 HRH1P35367 487 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 AQP2P41181 271 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 CXCL5P42830 114 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 TCP10Q12799 353 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 SF3A2Q15428 464 aaKnown RBP3.61□□□□□ -1.83
PRKDC-208ENST00000536710 TTLL9Q3SXZ7 439 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 ZNF658BQ4V348 819 aaPredicted RBP3.61□□□□□ -1.83
PRKDC-208ENST00000536710 PIGGQ5H8A4 983 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 CLEC2AQ6UVW9 174 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 STRADAQ7RTN6 431 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 SLC34A3Q8N130 599 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 PRELID2Q8N945 189 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 SMIM10Q96HG1 83 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 STOX2Q9P2F5 926 aaPredicted RBP3.61□□□□□ -1.83
PRKDC-208ENST00000536710 ZNF629Q9UEG4 869 aaPredicted RBP3.61□□□□□ -1.83
PRKDC-208ENST00000536710 PRG3Q9Y2Y8 225 aaPredicted RBP3.61□□□□□ -1.83
PRKDC-208ENST00000536710 CENPJQ9HC77 1338 aaPredicted RBP3.61□□□□□ -1.83
PRKDC-208ENST00000536710 NOTCH3Q9UM47 2321 aa3.61□□□□□ -1.83
PRKDC-208ENST00000536710 PES1O00541 588 aaKnown RBP3.6□□□□□ -1.83
PRKDC-208ENST00000536710 FABP3P05413 133 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 ASGR1P07306 291 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 MAS1LP35410 378 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 SLC7A9P82251 487 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 HMGCS1Q01581 520 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 SLC25A11Q02978 314 aaKnown RBP3.6□□□□□ -1.83
PRKDC-208ENST00000536710 PTPN20Q4JDL3 420 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 TTC23LQ6PF05 361 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 TMEM220Q6QAJ8 160 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 ZNF493Q6ZR52 646 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 CMC1Q7Z7K0 106 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 SCD5Q86SK9 330 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 MMAAQ8IVH4 418 aaKnown RBP3.6□□□□□ -1.83
PRKDC-208ENST00000536710 MDS2Q8NDY4 140 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 TEKT3Q9BXF9 490 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 MRPL37Q9BZE1 423 aaKnown RBP3.6□□□□□ -1.83
PRKDC-208ENST00000536710 DMAP1Q9NPF5 467 aaPredicted RBP3.6□□□□□ -1.83
PRKDC-208ENST00000536710 DDX18Q9NVP1 670 aaKnown RBP3.6□□□□□ -1.83
PRKDC-208ENST00000536710 LGALS13Q9UHV8 139 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 ZNF318Q5VUA4 2279 aa3.6□□□□□ -1.83
PRKDC-208ENST00000536710 CHST1O43916 411 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 SS18L1O75177 396 aaPredicted RBP3.59□□□□□ -1.83
PRKDC-208ENST00000536710 ZDHHC11BP0C7U3 371 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 STOMP27105 288 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 MRPL19P49406 292 aaKnown RBP3.59□□□□□ -1.83
PRKDC-208ENST00000536710 CYB561P49447 251 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 UBE2AP49459 152 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 RAB9AP51151 201 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 CRISP3P54108 245 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 STXBP1P61764 594 aaKnown RBP3.59□□□□□ -1.83
PRKDC-208ENST00000536710 PON3Q15166 354 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 LCE1EQ5T753 118 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 ANKRD22Q5VYY1 191 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 MBOAT1Q6ZNC8 495 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 ABHD13Q7L211 337 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 ZNF433Q8N7K0 673 aaPredicted RBP3.59□□□□□ -1.83
PRKDC-208ENST00000536710 LYPD6BQ8NI32 183 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 CD300LFQ8TDQ1 290 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 DUS3LQ96G46 650 aaKnown RBP3.59□□□□□ -1.83
PRKDC-208ENST00000536710 FAM210BQ96KR6 192 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 TAAR1Q96RJ0 339 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 IQCGQ9H095 443 aaKnown RBP3.59□□□□□ -1.83
PRKDC-208ENST00000536710 AUNIPQ9H7T9 357 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 BEX1Q9HBH7 125 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 RETNQ9HD89 108 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 MRPL22Q9NWU5 206 aaKnown RBP3.59□□□□□ -1.83
PRKDC-208ENST00000536710 CCDC59Q9P031 241 aaKnown RBP3.59□□□□□ -1.83
PRKDC-208ENST00000536710 CD84Q9UIB8 345 aa3.59□□□□□ -1.83
PRKDC-208ENST00000536710 ZNF223Q9UK11 482 aaPredicted RBP3.59□□□□□ -1.83
PRKDC-208ENST00000536710 TRBV9A0A0B4J1U6 114 aa3.58□□□□□ -1.84
PRKDC-208ENST00000536710 NCF1BA6NI72 391 aaPredicted RBP3.58□□□□□ -1.84
PRKDC-208ENST00000536710 NCF1CA8MVU1 366 aaPredicted RBP3.58□□□□□ -1.84
PRKDC-208ENST00000536710 SUPT3HB4E1H0 165 aa3.58□□□□□ -1.84
PRKDC-208ENST00000536710 SPECC1L-ADORA2AF8WAN1 911 aa3.58□□□□□ -1.84
PRKDC-208ENST00000536710 TMX2-CTNND1H3BSU7 103 aa3.58□□□□□ -1.84
PRKDC-208ENST00000536710 CD5LO43866 347 aa3.58□□□□□ -1.84
PRKDC-208ENST00000536710 EIF4E2O60573 245 aaKnown RBP3.58□□□□□ -1.84
PRKDC-208ENST00000536710 FKBP6O75344 327 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms