RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 NR0B2Q15466 257 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 OR7A5Q15622 319 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 MPPED2Q15777 294 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 RAB12Q6IQ22 244 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 ARHGAP11AQ6P4F7 1023 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 OR51D1Q8NGF3 324 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 OR51A4Q8NGJ6 313 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 RELTQ969Z4 430 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 TINAGL1Q9GZM7 467 aaPredicted RBP12.87□□□□□ -0.35
USP48-213ENST00000529637 MKKSQ9NPJ1 570 aaPredicted RBP12.87□□□□□ -0.35
USP48-213ENST00000529637 DUX4Q9UBX2 424 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 STEAP1Q9UHE8 339 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 TNFSF18Q9UNG2 199 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 FANCMQ8IYD8 2048 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 TRAV18A0A075B6X5 111 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 A0A0B4J2E0 115 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 A0A1B0GX12 115 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 M0QYG6 137 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 FADS1O60427 444 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 TNFP01375 233 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 ST6GAL1P15907 406 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 POU4F2Q12837 409 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 RNF44Q7L0R7 432 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 LRRTM1Q86UE6 522 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 AVL9Q8NBF6 648 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 BCL2L14Q9BZR8 327 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 TRIM2Q9C040 744 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 PRUNE2Q8WUY3 3088 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 A0A0D9SG52 128 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 BCL2L11O43521 198 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 NDUFS6O75380 124 aaKnown RBP12.86□□□□□ -0.35
USP48-213ENST00000529637 CSTAP01040 98 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 OR8G3PP0DMU2 310 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 CALCBP10092 127 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 RPS4Y1P22090 263 aaKnown RBP12.86□□□□□ -0.35
USP48-213ENST00000529637 FAUP35544 74 aaKnown RBP12.86□□□□□ -0.35
USP48-213ENST00000529637 CAPZA2P47755 286 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 PNLIPRP2P54317 469 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 ATP1B3P54709 279 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 FAM53BQ14153 422 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 PON3Q15166 354 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 NKAIN2Q5VXU1 208 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 ZCCHC12Q6PEW1 402 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 KIRREL2Q6UWL6 708 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 OR1J2Q8NGS2 313 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 PAQR8Q8TEZ7 354 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 PIAS3Q9Y6X2 628 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 BLOC1S5-TXNDC5H3BN57 136 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 XRCC3O43542 346 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 PDZK1IP1Q13113 114 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 SHHQ15465 462 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 CCDC157Q569K6 752 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 GLT8D1Q68CQ7 371 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 TMEM92Q6UXU6 159 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 KRT77Q7Z794 578 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 ZNF511Q8NB15 262 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 ANKRD9Q96BM1 317 aaPredicted RBP12.86□□□□□ -0.35
USP48-213ENST00000529637 CPNE2Q96FN4 548 aaPredicted RBP12.86□□□□□ -0.35
USP48-213ENST00000529637 TSSK2Q96PF2 358 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 ULBP3Q9BZM4 244 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 WBP1LQ9NX94 342 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 ZNF629Q9UEG4 869 aaPredicted RBP12.86□□□□□ -0.35
USP48-213ENST00000529637 TINAGQ9UJW2 476 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 PCOLCE2Q9UKZ9 415 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 TICRRQ7Z2Z1 1910 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 CPED1A4D0V7 1026 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 A6NCN8 305 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 NDUFB2O95178 105 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 ZNF806P0C7X5 589 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 HPGDP15428 266 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 CSF2RBP32927 897 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 PSG6Q00889 435 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 HHEXQ03014 270 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 ZNF600Q6ZNG1 722 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 CHRNA9Q9UGM1 479 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 DTX4Q9Y2E6 619 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 KLHDC2Q9Y2U9 406 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 CNTRLQ7Z7A1 2325 aa12.86□□□□□ -0.35
USP48-213ENST00000529637 GGT3PA6NGU5 568 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 CTAG2O75638 210 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 IGKV1D-16P01601 117 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 ANXA2P07355 339 aaKnown RBP12.85□□□□□ -0.35
USP48-213ENST00000529637 DLSTP36957 453 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 RPS27P42677 84 aaKnown RBP12.85□□□□□ -0.35
USP48-213ENST00000529637 MGAT2Q10469 447 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 C11orf87Q6NUJ2 197 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 PPP1R1CQ8WVI7 109 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 RASD2Q96D21 266 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 MYEF2Q9P2K5 600 aaKnown RBP12.85□□□□□ -0.35
USP48-213ENST00000529637 LRIT1Q9P2V4 623 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 FBXL21Q9UKT6 434 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 F5H0A9 414 aaPredicted RBP12.85□□□□□ -0.35
USP48-213ENST00000529637 GPRIN2O60269 458 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 ICOSLGO75144 302 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 SLC35E2P0CK97 266 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 AKAIN1P0CW23 69 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 CSRP1P21291 193 aaKnown RBP12.85□□□□□ -0.35
USP48-213ENST00000529637 CAPZA1P52907 286 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 AVPI1Q5T686 147 aa12.85□□□□□ -0.35
USP48-213ENST00000529637 GALNT16Q8N428 558 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms