RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TBPL2Q6SJ96 375 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 ZNF584Q8IVC4 421 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 DEFB107AQ8IZN7 70 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 ARHGAP24Q8N264 748 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 SVOPLQ8N434 492 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 FGFBP3Q8TAT2 258 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 HTRA1Q92743 480 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 TSPAN32Q96QS1 320 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 WACQ9BTA9 647 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 CCNB1IP1Q9NPC3 277 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 GRHPRQ9UBQ7 328 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 LOC390937A0A1W2PQ73 354 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 XKRYO14609 159 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 CDC42EP2O14613 210 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 SYNGR3O43761 229 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 TLX2O43763 284 aaPredicted RBP17.78■□□□□ 0.44
VPS28-206ENST00000526734 NDUFB2O95178 105 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 SEMG1P04279 462 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 MMP7P09237 267 aaPredicted RBP17.78■□□□□ 0.44
VPS28-206ENST00000526734 PATE4P0C8F1 98 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 LIMS1P48059 325 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 HSF2Q03933 536 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 FMODQ06828 376 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 KRTAP1-1Q07627 177 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 FAM27BQ5VT28 67 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 GPR139Q6DWJ6 353 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 FOXL2NBQ6ZUU3 175 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 IGFN1Q86VF2 1251 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 FAM86B1Q8N7N1 296 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 ZNF540Q8NDQ6 660 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 NABP1Q96AH0 204 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 GPX7Q96SL4 187 aaPredicted RBP17.78■□□□□ 0.44
VPS28-206ENST00000526734 PIMREGQ9BSJ6 248 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 AURKCQ9UQB9 309 aa17.78■□□□□ 0.44
VPS28-206ENST00000526734 A0A096LNT2 108 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 TMEM129A0AVI4 362 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 M0R233 179 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 CD5LO43866 347 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 PCSK6P29122 969 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 APLNRP35414 380 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 PCBD1P61457 104 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 MTX3Q5HYI7 312 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 UNQ6126/PRO20091Q6UXV3 157 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 CCDC197Q8NCU1 140 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 NSMAFQ92636 917 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 POP5Q969H6 163 aaKnown RBP17.77■□□□□ 0.44
VPS28-206ENST00000526734 FAM46AQ96IP4 442 aaKnown RBP17.77■□□□□ 0.44
VPS28-206ENST00000526734 ZNF570Q96NI8 536 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 BCL2L14Q9BZR8 327 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 MUC13Q9H3R2 512 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 MS4A5Q9H3V2 200 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 SIGLEC7Q9Y286 467 aa17.77■□□□□ 0.44
VPS28-206ENST00000526734 ARFGEF3Q5TH69 2177 aa17.77■□□□□ 0.43
VPS28-206ENST00000526734 CSPG4Q6UVK1 2322 aa17.77■□□□□ 0.43
VPS28-206ENST00000526734 NAV3Q8IVL0 2385 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 GPRIN2O60269 458 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 GADD45GO95257 159 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 FABP3P05413 133 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 CST2P09228 141 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 RAD52P43351 418 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 OMPP47874 163 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 SELENOVP59797 346 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 ERVK-25P63136 954 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 SGCAQ16586 387 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 IQCCQ4KMZ1 466 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 MEX3DQ86XN8 651 aaKnown RBP17.76■□□□□ 0.43
VPS28-206ENST00000526734 LRRC18Q8N456 261 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 FITM2Q8N6M3 262 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 MAPK1IP1LQ8NDC0 245 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 RSRC1Q96IZ7 334 aaKnown RBP17.76■□□□□ 0.43
VPS28-206ENST00000526734 FUZQ9BT04 418 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 MRPL37Q9BZE1 423 aaKnown RBP17.76■□□□□ 0.43
VPS28-206ENST00000526734 GPR160Q9UJ42 338 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 ZFHX3Q15911 3703 aa17.76■□□□□ 0.43
VPS28-206ENST00000526734 NIPBLQ6KC79 2804 aaeCLIP17.76■□□□□ 0.43
VPS28-206ENST00000526734 IGKV1D-43A0A0B4J1Z2 117 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 TRBV4-1A0A0J9YWV2 114 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 SH3PXD2BA1X283 911 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 PTP4A3O75365 173 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 APEHP13798 732 aaKnown RBP17.75■□□□□ 0.43
VPS28-206ENST00000526734 MSR1P21757 451 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 USF1P22415 310 aaPredicted RBP17.75■□□□□ 0.43
VPS28-206ENST00000526734 SDHAP31040 664 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 CDAP32320 146 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 IFNGR2P38484 337 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 SPIBQ01892 262 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 PABPC1L2AQ5JQF8 200 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 RGS7BPQ6MZT1 257 aaPredicted RBP17.75■□□□□ 0.43
VPS28-206ENST00000526734 FAM122BQ7Z309 247 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 SYT9Q86SS6 491 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 ADCK1Q86TW2 530 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 C1orf174Q8IYL3 243 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 ALDH16A1Q8IZ83 802 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 NSL1Q96IY1 281 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 IL1RAPQ9NPH3 570 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 NRIP3Q9NQ35 241 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 ACTR3BQ9P1U1 418 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 V9GYQ6 96 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 TLN2Q9Y4G6 2542 aa17.75■□□□□ 0.43
VPS28-206ENST00000526734 UNC119BA6NIH7 251 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms