RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 C1orf94Q6P1W5 598 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 Q6P435 159 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 IGFL3Q6UXB1 125 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 KATNAL2Q8IYT4 538 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 OFCC1Q8IZS5 231 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 IQCKQ8N0W5 287 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 VN1R2Q8NFZ6 395 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 KIFAP3Q92845 792 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 UCN3Q969E3 161 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 FAM104AQ969W3 186 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 TMEM246Q9BRR3 403 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 FANCEQ9HB96 536 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 TMEM165Q9HC07 324 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 MRPS30Q9NP92 439 aaKnown RBP2.98□□□□□ -1.93
CD44-223ENST00000526553 MRPL22Q9NWU5 206 aaKnown RBP2.98□□□□□ -1.93
CD44-223ENST00000526553 QPCTLQ9NXS2 382 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 CALYQ9NYX4 217 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 UXTQ9UBK9 157 aaPredicted RBP2.98□□□□□ -1.93
CD44-223ENST00000526553 GNPTGQ9UJJ9 305 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 KIAA1107Q9UPP5 1409 aa2.98□□□□□ -1.93
CD44-223ENST00000526553 CHD2O14647 1828 aaKnown RBP2.98□□□□□ -1.93
CD44-223ENST00000526553 PIK3C2BO00750 1634 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 CASKIN1Q8WXD9 1431 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 TRBV9A0A0B4J1U6 114 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 A0A1B0GTQ1 180 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 MRPS12O15235 138 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 CHST1O43916 411 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 MYL2P10916 166 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 HPGDP15428 266 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 CCNE1P24864 410 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 STOMP27105 288 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 GTF2E2P29084 291 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 RORAP35398 523 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 GPR6P46095 362 aaPredicted RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 MRPL19P49406 292 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 TMED10P49755 219 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 YWHAGP61981 247 aaKnown RBP eCLIP2.97□□□□□ -1.93
CD44-223ENST00000526553 ADARB1P78563 741 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 PAX5Q02548 391 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 CYTH1Q15438 398 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 XKR4Q5GH76 650 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 BEX5Q5H9J7 111 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 GPR157Q5UAW9 335 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 TWF2Q6IBS0 349 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 REEP3Q6NUK4 255 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 TMEM220Q6QAJ8 160 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 TIFABQ6ZNK6 161 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 LHFPL3Q86UP9 236 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 PDIK1LQ8N165 341 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 FBXL13Q8NEE6 735 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 OR1S2Q8NGQ3 325 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 C7orf33Q8WU49 177 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 NRGNQ92686 78 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 ISG20Q96AZ6 181 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 SGK3Q96BR1 496 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 TSG101Q99816 390 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 NRIP2Q9BQI9 281 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 ROGDIQ9GZN7 287 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 RNF167Q9H6Y7 350 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 RPRD1BQ9NQG5 326 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 SAMSN1Q9NSI8 373 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 NAP1L2Q9ULW6 460 aaPredicted RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 CHTOPQ9Y3Y2 248 aaKnown RBP2.97□□□□□ -1.93
CD44-223ENST00000526553 CDH10Q9Y6N8 788 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 SRCAPQ6ZRS2 3230 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 SHPRHQ149N8 1683 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 INSRP06213 1382 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 LRP6O75581 1613 aa2.97□□□□□ -1.93
CD44-223ENST00000526553 ERVK-7P63135 1459 aa2.96□□□□□ -1.93
CD44-223ENST00000526553 TIAM1Q13009 1591 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 SETBP1Q9Y6X0 1596 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 RTEL1-TNFRSF6BF6WH68 1400 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 KDM5AP29375 1690 aaKnown RBP2.96□□□□□ -1.94
CD44-223ENST00000526553 IGLV3-22A0A075B6J6 115 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 TRAV25A0A0B4J276 109 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 A0A0B4J2A0 478 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 SUPT3HB4E1H0 165 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 C12orf77C9JDV5 145 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 GOLGA8TH3BQL2 631 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 CDC7O00311 574 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 HUS1O60921 280 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 EEDO75530 441 aaKnown RBP2.96□□□□□ -1.94
CD44-223ENST00000526553 EIF3GO75821 320 aaKnown RBP eCLIP2.96□□□□□ -1.94
CD44-223ENST00000526553 ANXA5P08758 320 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 PSG2P11465 335 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 FMO3P31513 532 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 RBMXP38159 391 aaKnown RBP2.96□□□□□ -1.94
CD44-223ENST00000526553 VDAC2P45880 294 aaPredicted RBP2.96□□□□□ -1.94
CD44-223ENST00000526553 UQCRFS1P47985 274 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 APOC4P55056 127 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 TIMM10P62072 90 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 LIPEQ05469 1076 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 WDR43Q15061 677 aaKnown RBP eCLIP2.96□□□□□ -1.94
CD44-223ENST00000526553 NSDHLQ15738 373 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 MPPED2Q15777 294 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 HADHQ16836 314 aaKnown RBP2.96□□□□□ -1.94
CD44-223ENST00000526553 KLHL40Q2TBA0 621 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 PGGHGQ32M88 737 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 HSDL1Q3SXM5 330 aa2.96□□□□□ -1.94
CD44-223ENST00000526553 VAX1Q5SQQ9 334 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms