RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 H7C1C5 153 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 ABCD4O14678 606 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 SLC16A7O60669 478 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 RAB36O95755 333 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 IFNGP01579 166 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 HLA-HP01893 362 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 TP53P04637 393 aaPredicted RBP12.43□□□□□ -0.42
NUP54-216ENST00000514901 ZNF23P17027 643 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 LCN6P62502 163 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 RAB1AP62820 205 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 TUBA1BP68363 451 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 TUBA4AP68366 448 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 SGCAQ16586 387 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 SLC36A3Q495N2 470 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 TMEM53Q6P2H8 277 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 FAHD1Q6P587 224 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 LEG1Q6P5S2 330 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 PTCHD4Q6ZW05 846 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 TUBA1AQ71U36 451 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 MDP1Q86V88 176 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 GLB1L2Q8IW92 636 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 OR52E2Q8NGJ4 325 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 OR8D4Q8NGM9 314 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 OR4K13Q8NH42 304 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 NMNAT3Q96T66 252 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 TEX12Q9BXU0 123 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 PLA2G12AQ9BZM1 189 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 SEC61A2Q9H9S3 476 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 PAPOLBQ9NRJ5 636 aaKnown RBP12.43□□□□□ -0.42
NUP54-216ENST00000514901 ENOPH1Q9UHY7 261 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 KLHL21Q9UJP4 597 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 RTTNQ86VV8 2226 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 LRBAP50851 2863 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 IGHV1-18A0A0C4DH31 117 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 A0A1W2PPR1 153 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 HS3ST1O14792 307 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 SOX14O95416 240 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 PTHP01270 115 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 CRYAAP02489 173 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 CST2P09228 141 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 CTLA4P16410 223 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 MSR1P21757 451 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 LAP3P28838 519 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 CDAP32320 146 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 GIPRP48546 466 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 PTDSS1P48651 473 aaKnown RBP12.42□□□□□ -0.42
NUP54-216ENST00000514901 PCBD1P61457 104 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 PIGFQ07326 219 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.42□□□□□ -0.42
NUP54-216ENST00000514901 ZNF672Q499Z4 452 aaPredicted RBP12.42□□□□□ -0.42
NUP54-216ENST00000514901 SLC35F1Q5T1Q4 408 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 SLC27A4Q6P1M0 643 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 SLC22A25Q6T423 547 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 C20orf204Q6ZNR8 217 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 SYT9Q86SS6 491 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 PIAS4Q8N2W9 510 aaPredicted RBP12.42□□□□□ -0.42
NUP54-216ENST00000514901 PARP8Q8N3A8 854 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 NPEPL1Q8NDH3 523 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 AKAP1Q92667 903 aaKnown RBP eCLIP12.42□□□□□ -0.42
NUP54-216ENST00000514901 NINJ1Q92982 152 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 NABP1Q96AH0 204 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 SH3GL3Q99963 347 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 NUAK2Q9H093 628 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 GABARAPL1Q9H0R8 117 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 RNF121Q9H920 327 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 S100A14Q9HCY8 104 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 CCNB1IP1Q9NPC3 277 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 ZNF224Q9NZL3 707 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 FKBP7Q9Y680 259 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 CCDC168Q8NDH2 2452 aa12.42□□□□□ -0.42
NUP54-216ENST00000514901 MAST4O15021 2626 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 A0A1W2PPL8 197 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 ZNF503-AS2A6NEH8 195 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 C12orf71A8MTZ7 269 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 SHISA9B4DS77 424 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 H3BNX3 289 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 PLAUP00749 431 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 HMGN1P05114 100 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 SERPINA5P05154 406 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 IGFBP1P08833 259 aaPredicted RBP12.41□□□□□ -0.42
NUP54-216ENST00000514901 CECR9P0C854 216 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 POU1F1P28069 291 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 GRK5P34947 590 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 DAPP51397 102 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 IDH3GP51553 393 aaPredicted RBP12.41□□□□□ -0.42
NUP54-216ENST00000514901 LSM6P62312 80 aaKnown RBP12.41□□□□□ -0.42
NUP54-216ENST00000514901 ESRRGP62508 458 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 PLP2Q04941 152 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 NPRL3Q12980 569 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 ETFDHQ16134 617 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 PGGHGQ32M88 737 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 ZBTB46Q86UZ6 589 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 LRRC18Q8N456 261 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 ZNF611Q8N823 705 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 OR4F15Q8NGB8 312 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 OR4Q3Q8NH05 313 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 DDOQ99489 341 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 RACGAP1Q9H0H5 632 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 SEMA6AQ9H2E6 1030 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 C1orf198Q9H425 327 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms