RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PHF19Q5T6S3 580 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 PARM1Q6UWI2 310 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 CDH26Q8IXH8 852 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 TEX19Q8NA77 164 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 FNDC9Q8TBE3 224 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 WDR89Q96FK6 387 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SMIM3Q9BZL3 60 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF304Q9HCX3 659 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 RPS10P5Q9NQ39 176 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 OR5V1Q9UGF6 321 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 KCNG2Q9UJ96 466 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 F5P12259 2224 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 A0A087WUJ7 227 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 OR6C68A6NDL8 312 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 TMEM235A6NFC5 223 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 OR5H14A6NHG9 310 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 TMEM200CA6NKL6 621 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 FBXO24O75426 580 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 HPXP02790 462 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 APEHP13798 732 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 IL10RAQ13651 578 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 RSU1Q15404 277 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 RAB30Q15771 203 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 ELFN2Q5R3F8 820 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 C19orf48Q6RUI8 117 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 DCXRQ7Z4W1 244 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC22A24Q8N4F4 322 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 FAM160A2Q8N612 972 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 ARIH2OSQ8N7S6 290 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 RLN3Q8WXF3 142 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 MAFIPQ8WZ33 124 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 RAB3CQ96E17 227 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC25A32Q9H2D1 315 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 NKX2-4Q9H2Z4 354 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 MCCC2Q9HCC0 563 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF160Q9HCG1 818 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 SLCO1C1Q9NYB5 712 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 SF3B6Q9Y3B4 125 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 HRH3Q9Y5N1 445 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 RALGAPA2Q2PPJ7 1873 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 RLFQ13129 1914 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 DOCK3Q8IZD9 2030 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 OR2W5A6NFC9 320 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 A8MVM7 634 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 OR2F2O95006 317 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 PMP2P02689 132 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 ADRB1P08588 477 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 S100A2P29034 98 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 DRD3P35462 400 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 OR2F1Q13607 317 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 ACKR1Q16570 336 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 SGCBQ16585 318 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 PRSS41Q7RTY9 318 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 MCEMP1Q8IX19 187 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF679Q8IYX0 411 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 RNF141Q8WVD5 230 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 OR2A5Q96R48 311 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 C1orf198Q9H425 327 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 PLEKHJ1Q9NW61 149 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 EHFQ9NZC4 300 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 HSPA12AO43301 675 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 MED6O75586 246 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 GLSO94925 669 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 SULT1A3P0DMM9 295 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 SULT1A4P0DMN0 295 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 FXYD4P59646 89 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 LGALSLQ3ZCW2 172 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 CDONQ4KMG0 1287 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 FAM74A1Q5RGS3 127 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 C1orf140Q5VVS0 124 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 CD200R1LQ6Q8B3 271 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 NKAIN3Q8N8D7 197 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 PBDC1Q9BVG4 233 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 PIGMQ9H3S5 423 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 DNAJB12Q9NXW2 375 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 HAO2Q9NYQ3 351 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 DHCR7Q9UBM7 475 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 KIAA0100Q14667 2235 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 C9J4A7 227 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 MT-ATP6P00846 226 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 OR8U9P0C7N5 309 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 GNRHRP30968 328 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 AKR1C2P52895 323 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 MRPS21P82921 87 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 AKR1C1Q04828 323 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 HLXQ14774 488 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 RAET1LQ5VY80 246 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 OR10K2Q6IF99 312 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF425Q6IV72 752 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 ETFBKMTQ8IXQ9 262 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC22A8Q8TCC7 542 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 HHIPQ96QV1 700 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 KCNJ15Q99712 375 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 TMEM59Q9BXS4 323 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 MCOLN1Q9GZU1 580 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 DNTTIP1Q9H147 329 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC7A11Q9UPY5 501 aa7.66□□□□□ -1.18
LIMCH1-216ENST00000512820 TDRD15B5MCY1 1934 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-216ENST00000512820 LOC107986453A0A1B0GWG9 222 aa7.65□□□□□ -1.18
LIMCH1-216ENST00000512820 C7orf66A4D0T2 115 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms