RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 CD80P33681 288 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 SLC6A9P48067 706 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 MMP15P51511 669 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 PAX8Q06710 450 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 SLC3A1Q07837 685 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 FAM91A1Q658Y4 838 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 PIWIL3Q7Z3Z3 882 aaKnown RBP13.87□□□□□ -0.19
VIM-208ENST00000497849 OR6N1Q8NGY5 312 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 SLC41A3Q96GZ6 507 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 RMND5AQ9H871 391 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 PATZ1Q9HBE1 687 aaKnown RBP13.87□□□□□ -0.19
VIM-208ENST00000497849 CDH20Q9HBT6 801 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 MRGBPQ9NV56 204 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 NDUFAF1Q9Y375 327 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 NPTNQ9Y639 398 aa13.87□□□□□ -0.19
VIM-208ENST00000497849 A0A087WUJ7 227 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 SLC22A31A6NKX4 558 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 MFN2O95140 757 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 NDUFA7O95182 113 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 ANP32DO95626 131 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 MT-ND5P03915 603 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 SBK2P0C263 348 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 COX4I1P13073 169 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 TXNL4AP83876 142 aaKnown RBP13.86□□□□□ -0.19
VIM-208ENST00000497849 PMS2P3Q13401 168 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 MOGQ16653 247 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 WDR88Q6ZMY6 472 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 Q6ZPA2 131 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 MSANTD1Q6ZTZ1 278 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 NET1Q7Z628 596 aaPredicted RBP13.86□□□□□ -0.19
VIM-208ENST00000497849 MSRB3Q8IXL7 192 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 SLC22A24Q8N4F4 322 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 ICA1LQ8NDH6 482 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 SLC38A4Q969I6 547 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 BCL2L14Q9BZR8 327 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 PRDM13Q9H4Q3 707 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 EGFL7Q9UHF1 273 aa13.86□□□□□ -0.19
VIM-208ENST00000497849 ZSCAN5BA6NJL1 495 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 SRRM5B3KS81 715 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 ANGPT2O15123 496 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 NQO1P15559 274 aaKnown RBP13.85□□□□□ -0.19
VIM-208ENST00000497849 ANXA11P50995 505 aaKnown RBP13.85□□□□□ -0.19
VIM-208ENST00000497849 CYLC2Q14093 348 aaPredicted RBP13.85□□□□□ -0.19
VIM-208ENST00000497849 TAF9Q16594 264 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 FIP1L1Q6UN15 594 aaKnown RBP13.85□□□□□ -0.19
VIM-208ENST00000497849 DLEU7Q6UYE1 221 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 GEMIN6Q8WXD5 167 aaKnown RBP13.85□□□□□ -0.19
VIM-208ENST00000497849 DCLRE1CQ96SD1 692 aaKnown RBP13.85□□□□□ -0.19
VIM-208ENST00000497849 DIRC2Q96SL1 478 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 SH3GL3Q99963 347 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 SPATA9Q9BWV2 254 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 TNFRSF19Q9NS68 423 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 ARL8BQ9NVJ2 186 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 SLC25A37Q9NYZ2 338 aa13.85□□□□□ -0.19
VIM-208ENST00000497849 TRAV36DV7A0A075B6V5 113 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 ZNF726A6NNF4 738 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 SLC22A2O15244 555 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 PPIAL4GP0DN37 164 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 HOXB9P17482 250 aaPredicted RBP13.84□□□□□ -0.19
VIM-208ENST00000497849 CSNK1A1P48729 337 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 MVDP53602 400 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 PAX2Q02962 417 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 NFYCQ13952 458 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 HLXQ14774 488 aaPredicted RBP13.84□□□□□ -0.19
VIM-208ENST00000497849 KRT72Q14CN4 511 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 LARS2Q15031 903 aaKnown RBP13.84□□□□□ -0.19
VIM-208ENST00000497849 DEFB112Q30KQ8 113 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 BEAN1Q3B7T3 259 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 RPS26P11Q5JNZ5 115 aaPredicted RBP13.84□□□□□ -0.19
VIM-208ENST00000497849 C5orf46Q6UWT4 87 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 OR1J1Q8NGS3 322 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 TSPEARQ8WU66 669 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 UPRTQ96BW1 309 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 RCN3Q96D15 328 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 C12orf10Q9HB07 376 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 TMEM38BQ9NVV0 291 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 VAPAQ9P0L0 249 aa13.84□□□□□ -0.19
VIM-208ENST00000497849 DOCK11Q5JSL3 2073 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 TRAV40A0A0B4J280 105 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 F5H0A9 414 aaPredicted RBP13.83□□□□□ -0.2
VIM-208ENST00000497849 MRASO14807 208 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 CRYBA1P05813 215 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 BCHEP06276 602 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 ADH4P08319 380 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 ZCCHC18P0CG32 403 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 MPV17P39210 176 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 LRRC74AQ0VAA2 488 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 SELPLGQ14242 412 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 MAPRE2Q15555 327 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 TBC1D28Q2M2D7 210 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 TMEM155Q4W5P6 130 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 LRIF1Q5T3J3 769 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 DHDDSQ86SQ9 333 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 KLHL36Q8N4N3 616 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 SPICQ8N5J4 248 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 TRIML2Q8N7C3 387 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 SCAIQ8N9R8 606 aa13.83□□□□□ -0.2
VIM-208ENST00000497849 RP9Q8TA86 221 aaKnown RBP13.83□□□□□ -0.2
VIM-208ENST00000497849 FAM110DQ8TAY7 271 aaPredicted RBP13.83□□□□□ -0.2
VIM-208ENST00000497849 SLC38A5Q8WUX1 472 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms