RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SIAEQ9HAT2 523 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 SMURF2Q9HAU4 748 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 INIPQ9NRY2 104 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 ZNF224Q9NZL3 707 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 H3BSA7 217 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 IGF2P01344 180 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 MT-ND1P03886 318 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 OPN1SWP03999 348 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 ASAH2BP0C7U1 165 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 PATE4P0C8F1 98 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 SNRPBP14678 240 aaKnown RBP9.9□□□□□ -0.82
COL6A3-213ENST00000493475 TNFSF4P23510 183 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 GDI2P50395 445 aaKnown RBP9.9□□□□□ -0.82
COL6A3-213ENST00000493475 MTPNP58546 118 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 MVKQ03426 396 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 TAF11Q15544 211 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 DUSP7Q16829 419 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 ALKBH6Q3KRA9 238 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 ERICH5Q6P6B1 374 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 USP51Q70EK9 711 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 COMTD1Q86VU5 262 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 LRP11Q86VZ4 500 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 DPP10Q8N608 796 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-213ENST00000493475 OR1J1Q8NGS3 322 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 SGMS2Q8NHU3 365 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 FAM216AQ8WUB2 273 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 MCHR2Q969V1 340 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 SGTBQ96EQ0 304 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 GAL3ST1Q99999 423 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 EBF4Q9BQW3 602 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 PCDHAC1Q9H158 963 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 IKZF5Q9H5V7 419 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 INTS9Q9NV88 658 aaKnown RBP9.9□□□□□ -0.82
COL6A3-213ENST00000493475 TAS2R5Q9NYW4 299 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 MED31Q9Y3C7 131 aa9.9□□□□□ -0.82
COL6A3-213ENST00000493475 ANK2Q01484 3957 aa9.9□□□□□ -0.83
COL6A3-213ENST00000493475 ISPDA4D126 451 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 FAM157AC9JC47 383 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 TPST2O60704 377 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 RP2O75695 350 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 IGHV3-13P01766 116 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 IGFBP1P08833 259 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-213ENST00000493475 THRBP10828 461 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 ACADSP16219 412 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 STOMP27105 288 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 MAGEB1P43366 347 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 HILS1P60008 231 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 MRPS34P82930 218 aaKnown RBP9.89□□□□□ -0.83
COL6A3-213ENST00000493475 CD47Q08722 323 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 FAM205BPQ63HN1 556 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 LRFN4Q6PJG9 635 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 DLEU7Q6UYE1 221 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 NHLRC1Q6VVB1 395 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 WDR88Q6ZMY6 472 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 LSRQ86X29 649 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-213ENST00000493475 ZNF584Q8IVC4 421 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 LRRC18Q8N456 261 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 SYT14Q8NB59 555 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 YIPF5Q969M3 257 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 ATP6V1G3Q96LB4 118 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 RBP7Q96R05 134 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 ECSITQ9BQ95 431 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 KAT8Q9H7Z6 458 aaKnown RBP9.89□□□□□ -0.83
COL6A3-213ENST00000493475 ELOVL3Q9HB03 270 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 NTN4Q9HB63 628 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 MYEF2Q9P2K5 600 aaKnown RBP9.89□□□□□ -0.83
COL6A3-213ENST00000493475 ZDHHC8Q9ULC8 765 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 SH3GLB1Q9Y371 365 aa9.89□□□□□ -0.83
COL6A3-213ENST00000493475 NPIPB13A6NJU9 1138 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 NPIPB4C9JG80 1138 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 NCR1O76036 304 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 OR7A10O76100 309 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 OR5F1O95221 314 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 F13BP05160 661 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 CCL2P13500 99 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 FUT1P19526 365 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 GSTM3P21266 225 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 TUBG1P23258 451 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 CFPP27918 469 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 LMO4P61968 165 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 RPL18Q07020 188 aaKnown RBP9.88□□□□□ -0.83
COL6A3-213ENST00000493475 MAPRE2Q15555 327 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 SGCAQ16586 387 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 TSTQ16762 297 aaKnown RBP9.88□□□□□ -0.83
COL6A3-213ENST00000493475 VMACQ2NL98 169 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 PABPC1L2AQ5JQF8 200 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 THEM4Q5T1C6 240 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 C10orf128Q5T292 105 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 AVPI1Q5T686 147 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 METTL21CQ5VZV1 264 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 C1QL2Q7Z5L3 287 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 PTOV1Q86YD1 416 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 C10orf111Q8N326 155 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 SEMA6DQ8NFY4 1073 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 OR10A6Q8NH74 314 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 TMEM239Q8WW34 195 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 LZICQ8WZA0 190 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 CCL17Q92583 94 aa9.88□□□□□ -0.83
COL6A3-213ENST00000493475 COG8Q96MW5 612 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms