RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 GPR75O95800 540 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 CYB5AP00167 134 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 RAC2P15153 192 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 PRKXP51817 358 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 EGR3Q06889 387 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 AVPI1Q5T686 147 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 H3F3CQ6NXT2 135 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 FAM122BQ7Z309 247 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 GTPBP8Q8N3Z3 284 aaPredicted RBP12.04□□□□□ -0.48
USP40-214ENST00000483519 OR51A4Q8NGJ6 313 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 OR10AC1Q8NH08 325 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 GLYATL2Q8WU03 294 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 TM4SF19Q96DZ7 209 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 SEH1LQ96EE3 360 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 ZNF107Q9UII5 783 aaPredicted RBP12.04□□□□□ -0.48
USP40-214ENST00000483519 NUP210LQ5VU65 1888 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 A0A1B0GTH9 108 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 ZNF860A6NHJ4 632 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 M0QYG6 137 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 SULT2B1O00204 365 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 FADS1O60427 444 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 RAD1O60671 282 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 GRK6P43250 576 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 NR0B1P51843 470 aaKnown RBP12.04□□□□□ -0.48
USP40-214ENST00000483519 AKR1C2P52895 323 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 AKR1C1Q04828 323 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 ZNHIT3Q15649 155 aaPredicted RBP12.04□□□□□ -0.48
USP40-214ENST00000483519 INPP5JQ15735 1006 aaPredicted RBP12.04□□□□□ -0.48
USP40-214ENST00000483519 BIVMQ86UB2 503 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 GALNT16Q8N428 558 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 RSPRY1Q96DX4 576 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 EDEM2Q9BV94 578 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 TINAGL1Q9GZM7 467 aaPredicted RBP12.04□□□□□ -0.48
USP40-214ENST00000483519 DZANK1Q9NVP4 752 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 FBXO4Q9UKT5 387 aa12.04□□□□□ -0.48
USP40-214ENST00000483519 TTLL8A6PVC2 850 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ZNF736B4DX44 427 aaPredicted RBP12.03□□□□□ -0.48
USP40-214ENST00000483519 SMAD9O15198 467 aaKnown RBP12.03□□□□□ -0.48
USP40-214ENST00000483519 GUSBP08236 651 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 CT62P0C5K7 136 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 APEHP13798 732 aaKnown RBP12.03□□□□□ -0.48
USP40-214ENST00000483519 HLA-GP17693 338 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 CAPZA1P52907 286 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ATP1B3P54709 279 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 NR0B2Q15466 257 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 STOML3Q8TAV4 291 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ING5Q8WYH8 240 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 SLC22A18Q96BI1 424 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 GUCD1Q96NT3 240 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 CNTNAP3BQ96NU0 1288 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 TSSK2Q96PF2 358 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 WDR76Q9H967 626 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 TMEM74BQ9NUR3 256 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 TMEM14AQ9Y6G1 99 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 PRR19A6NJB7 356 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ELOA3DA6NLF2 546 aaPredicted RBP12.03□□□□□ -0.48
USP40-214ENST00000483519 EFCAB7A8K855 629 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 CCSO14618 274 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 CD14P08571 375 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 SPP1P10451 314 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 TPT1P13693 172 aaKnown RBP12.03□□□□□ -0.48
USP40-214ENST00000483519 CENPAP49450 140 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 FOXK1P85037 733 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 MGAT2Q10469 447 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 SWI5Q1ZZU3 235 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ODF4Q2M2E3 257 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ELOA3BQ3SY89 546 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 FCRL6Q6DN72 434 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 FBXO42Q6P3S6 717 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ZNF627Q7L945 461 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 SKA3Q8IX90 412 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 BPIFB2Q8N4F0 458 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 EXD3Q8N9H8 876 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ELOA3Q8NG57 546 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 OR52R1Q8NGF1 315 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 OR6N2Q8NGY6 317 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 SFT2D1Q8WV19 159 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 SEC22AQ96IW7 307 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 DCBLD2Q96PD2 775 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 OR2A5Q96R48 311 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ADAT1Q9BUB4 502 aaKnown RBP12.03□□□□□ -0.48
USP40-214ENST00000483519 ULBP3Q9BZM4 244 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 KCNK15Q9H427 330 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 ZNF346Q9UL40 294 aaKnown RBP12.03□□□□□ -0.48
USP40-214ENST00000483519 PLEKHA6Q9Y2H5 1048 aa12.03□□□□□ -0.48
USP40-214ENST00000483519 BLOC1S5-TXNDC5H3BN57 136 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 H3BSH0 61 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 PHYHO14832 338 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 CEACAM5P06731 702 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 SDHAP31040 664 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 CCKBRP32239 447 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 SCGB2B2Q4G0G5 96 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 TMEM71Q6P5X7 295 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 DMBX1Q8NFW5 382 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 PAQR8Q8TEZ7 354 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 HOXB13Q92826 284 aaPredicted RBP12.02□□□□□ -0.48
USP40-214ENST00000483519 CTHRC1Q96CG8 243 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 C4orf45Q96LM5 186 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 LRRC3BQ96PB8 259 aa12.02□□□□□ -0.48
USP40-214ENST00000483519 SEC11CQ9BY50 192 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms