RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 GTF2H4Q92759 462 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 TMBIM1Q969X1 311 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 BIRC7Q96CA5 298 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 SGTBQ96EQ0 304 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 C16orf58Q96GQ5 468 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 CPB2Q96IY4 423 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 SECISBP2Q96T21 854 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 SPAG8Q99932 426 aaPredicted RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 C7orf50Q9BRJ6 194 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 ZSCAN5AQ9BUG6 496 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 NTMT1Q9BV86 223 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 BBS2Q9BXC9 721 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 RSPH9Q9H1X1 276 aaPredicted RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 CXXC4Q9H2H0 198 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 DHX35Q9H5Z1 703 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 ZFP14Q9HCL3 533 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 ACP6Q9NPH0 428 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 ACOT13Q9NPJ3 140 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 XPNPEP1Q9NQW7 623 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 FARSBQ9NSD9 589 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 LYARQ9NX58 379 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 DHRS4-AS1Q9P1J3 65 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 SPASTQ9UBP0 616 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 EIF3KQ9UBQ5 218 aaKnown RBP4.47□□□□□ -1.69
USP40-213ENST00000483216 UBIAD1Q9Y5Z9 338 aa4.47□□□□□ -1.69
USP40-213ENST00000483216 PARP14Q460N5 1801 aa4.46□□□□□ -1.69
USP40-213ENST00000483216 ABCA7Q8IZY2 2146 aa4.46□□□□□ -1.69
USP40-213ENST00000483216 FAM240BA0A1B0GVZ2 78 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 OR6C70A6NIJ9 312 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 C12orf71A8MTZ7 269 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 H7C2Y5 167 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 M0QYV0 167 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 DDX39AO00148 427 aaKnown RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 TOR1AO14656 332 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 RGS5O15539 181 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 SLC19A2O60779 497 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 ZNF253O75346 499 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 PIAS1O75925 651 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 SLC22A5O76082 557 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 CDK14O94921 469 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 LALBAP00709 142 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 GGT1P19440 569 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 AXLP30530 894 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 BRCC3P46736 316 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 GBX2P52951 348 aaPredicted RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 ATXN3P54252 364 aaPredicted RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 RPS6P62753 249 aaKnown RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 PPP3R1P63098 170 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 GALK2Q01415 458 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 PRKCEQ02156 737 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 ZNF33BQ06732 778 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 EMC2Q15006 297 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 NCF4Q15080 339 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 PAFAH1B3Q15102 231 aaKnown RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 SF3A2Q15428 464 aaKnown RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 ADPRMQ3LIE5 342 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 PARP15Q460N3 678 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 PTPN20Q4JDL3 420 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 DCAF12Q5T6F0 453 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 Q6ZRG5 221 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 KCTD9Q7L273 389 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 GDPD3Q7L5L3 318 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 PRSS42Q7Z5A4 293 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 SLC30A8Q8IWU4 369 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 RIMKLAQ8IXN7 391 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 OFCC1Q8IZS5 231 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 RDH10Q8IZV5 341 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 ZNF491Q8N8L2 437 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 SIDT2Q8NBJ9 832 aaKnown RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 CCNYQ8ND76 341 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 DUSP18Q8NEJ0 188 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 OR8H1Q8NGG4 311 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 OR56A4Q8NGH8 313 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 NDNFQ8TB73 568 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 RXFP2Q8WXD0 754 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 ELMO1Q92556 727 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 UFD1Q92890 307 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 MYLPFQ96A32 169 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 RBM18Q96H35 190 aaKnown RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 SERPINB11Q96P15 392 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 OPALINQ96PE5 141 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 COPS4Q9BT78 406 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 ZNF416Q9BWM5 594 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 MND1Q9BWT6 205 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 PRRG3Q9BZD7 231 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 ZBP1Q9H171 429 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 PORCNQ9H237 461 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 SPNS1Q9H2V7 528 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 NXF3Q9H4D5 531 aaKnown RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 REEP1Q9H902 201 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 ACTR8Q9H981 624 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 ANKRA2Q9H9E1 313 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 CUTCQ9NTM9 273 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 RBFOX1Q9NWB1 397 aaKnown RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 MCUBQ9NWR8 336 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 WRAP73Q9P2S5 460 aaPredicted RBP4.46□□□□□ -1.7
USP40-213ENST00000483216 SSR3Q9UNL2 185 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 MFHAS1Q9Y4C4 1052 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 CEP350Q5VT06 3117 aa4.46□□□□□ -1.7
USP40-213ENST00000483216 DICER1Q9UPY3 1922 aaKnown RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms