RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CREG2Q8IUH2 290 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 UEVLDQ8IX04 471 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 CTAGE3PQ8IX95 158 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 SLC22A24Q8N4F4 322 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 NPEPL1Q8NDH3 523 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 RBM15BQ8NDT2 890 aaKnown RBP6.56□□□□□ -1.36
USP54-211ENST00000474929 ADPRHL1Q8NDY3 354 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 SLC25A40Q8TBP6 338 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 ADAMTS16Q8TE57 1224 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 ITLN1Q8WWA0 313 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 TFAP2CQ92754 450 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 TMEM237Q96Q45 408 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 OR2V2Q96R30 315 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 CCT7Q99832 543 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 PRSS22Q9GZN4 317 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 RMND5AQ9H871 391 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 ZNF702PQ9H963 129 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 EDA2RQ9HAV5 297 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 MSL2Q9HCI7 577 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 SH3BP4Q9P0V3 963 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 WDR45Q9Y484 360 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 POLR3HQ9Y535 204 aaPredicted RBP6.56□□□□□ -1.36
USP54-211ENST00000474929 HECTD4Q9Y4D8 3996 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 HUWE1Q7Z6Z7 4374 aaKnown RBP6.55□□□□□ -1.36
USP54-211ENST00000474929 ALMS1Q8TCU4 4167 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 CFAP73A6NFT4 308 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 NDUFA2O43678 99 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 FZD7O75084 574 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 C2P06681 752 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 GSTA2P09210 222 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 MED14OSP0DP75 135 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 CCL2P13500 99 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 MPV17P39210 176 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 PSMB10P40306 273 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 SRP9P49458 86 aaKnown RBP6.55□□□□□ -1.36
USP54-211ENST00000474929 PKNOX1P55347 436 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 GUCY2DQ02846 1103 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 CLCQ05315 142 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 PDIA2Q13087 525 aaKnown RBP6.55□□□□□ -1.36
USP54-211ENST00000474929 LSM12Q3MHD2 195 aaKnown RBP6.55□□□□□ -1.36
USP54-211ENST00000474929 NCR3LG1Q68D85 454 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 ZNF841Q6ZN19 808 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 SLC16A14Q7RTX9 510 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 PSMA8Q8TAA3 256 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 MAELQ96JY0 434 aaKnown RBP6.55□□□□□ -1.36
USP54-211ENST00000474929 NKX3-1Q99801 234 aaPredicted RBP6.55□□□□□ -1.36
USP54-211ENST00000474929 SSX3Q99909 188 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 PTDSS2Q9BVG9 487 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 TRIM31Q9BZY9 425 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 OR2J1Q9GZK6 312 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 MYLK2Q9H1R3 596 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 KCNN2Q9H2S1 579 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 ELOVL3Q9HB03 270 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 GCM1Q9NP62 436 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 RRAGDQ9NQL2 400 aaPredicted RBP6.55□□□□□ -1.36
USP54-211ENST00000474929 NANSQ9NR45 359 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 ATAD3AQ9NVI7 634 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 GPATCH2Q9NW75 528 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 MKS1Q9NXB0 559 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 KCNE5Q9UJ90 142 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 MKLN1Q9UL63 735 aa6.55□□□□□ -1.36
USP54-211ENST00000474929 TCRBV4S1A1TA0A5B7 111 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 ELOVL7A1L3X0 281 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 MEIOCA2RUB1 952 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 MEGF11A6BM72 1044 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 FAM159BA6NKW6 160 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 ZNF726A6NNF4 738 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 E7ESA3 106 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 H3BQF6 201 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 ZNF500O60304 480 aaPredicted RBP6.54□□□□□ -1.36
USP54-211ENST00000474929 ICMTO60725 284 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 IGF2P01344 180 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 CCNOP22674 350 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 ARRB2P32121 409 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 SAA4P35542 130 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 HPCAL1P37235 193 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 VDAC2P45880 294 aaPredicted RBP6.54□□□□□ -1.36
USP54-211ENST00000474929 CSNK1A1P48729 337 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 SERPINB8P50452 374 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 PPP1CBP62140 327 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 ARF6P62330 175 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 DR1Q01658 176 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 PLECQ15149 4684 aaKnown RBP6.54□□□□□ -1.36
USP54-211ENST00000474929 SPATA46Q5T0L3 261 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 CARD17Q5XLA6 110 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 WBP2NLQ6ICG8 309 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 SKA3Q8IX90 412 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 C11orf42Q8N5U0 333 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 PYROXD1Q8WU10 500 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 OR5P2Q8WZ92 322 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 LINC00476Q8WZB0 136 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 ERGIC1Q969X5 290 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 COG8Q96MW5 612 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 ZNF583Q96ND8 569 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 SEMA6AQ9H2E6 1030 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 MMADHCQ9H3L0 296 aaPredicted RBP6.54□□□□□ -1.36
USP54-211ENST00000474929 ATP6V1HQ9UI12 483 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 ZNF225Q9UK10 706 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 PITPNC1Q9UKF7 332 aa6.54□□□□□ -1.36
USP54-211ENST00000474929 SNX24Q9Y343 169 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms