RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CDKN1AP38936 164 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 ZNF84P51523 738 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 COX10Q12887 443 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 PGGHGQ32M88 737 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 ZNF813Q6ZN06 617 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 ZNF620Q6ZNG0 422 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 WDR31Q8NA23 367 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 MAGEE2Q8TD90 523 aaPredicted RBP15.45■□□□□ 0.06
COL7A1-205ENST00000465238 PYDC1Q8WXC3 89 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 NRBF2Q96F24 287 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 ERMAPQ96PL5 475 aaPredicted RBP15.45■□□□□ 0.06
COL7A1-205ENST00000465238 GRIP2Q9C0E4 1043 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 DENND2DQ9H6A0 471 aaPredicted RBP15.45■□□□□ 0.06
COL7A1-205ENST00000465238 EGLN3Q9H6Z9 239 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 NTN4Q9HB63 628 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 OBP2BQ9NPH6 170 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 FAIMQ9NVQ4 179 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 CISD1Q9NZ45 108 aaKnown RBP15.45■□□□□ 0.06
COL7A1-205ENST00000465238 SLC25A15Q9Y619 301 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 COL6A5A8TX70 2615 aa15.45■□□□□ 0.06
COL7A1-205ENST00000465238 TEX13CA0A0J9YWL9 993 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 RNF223E7ERA6 249 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 SOCS2O14508 198 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 SEC14L2O76054 403 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 APEHP13798 732 aaKnown RBP15.44■□□□□ 0.06
COL7A1-205ENST00000465238 ANXA8P13928 327 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 PRKACGP22612 351 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 NOS3P29474 1203 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 SDHAP31040 664 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 KRR1Q13601 381 aaKnown RBP15.44■□□□□ 0.06
COL7A1-205ENST00000465238 THEM4Q5T1C6 240 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 ZFP1Q6P2D0 407 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 SHQ1Q6PI26 577 aaKnown RBP15.44■□□□□ 0.06
COL7A1-205ENST00000465238 FAM122BQ7Z309 247 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 AMIGO2Q86SJ2 522 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 OR5K1Q8NHB7 308 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 LRTOMTQ8WZ04 291 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 RASD2Q96D21 266 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 RADILQ96JH8 1075 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 FOXB1Q99853 325 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 NIPSNAP1Q9BPW8 284 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 IL20Q9NYY1 176 aa15.44■□□□□ 0.06
COL7A1-205ENST00000465238 HEATR1Q9H583 2144 aaKnown RBP15.43■□□□□ 0.06
COL7A1-205ENST00000465238 KIAA1324LA8MWY0 1029 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-205ENST00000465238 SHISA9B4DS77 424 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 ABCD4O14678 606 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 IMPA2O14732 288 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 ARPC3O15145 178 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 IDH3BO43837 385 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 AHCYL1O43865 530 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 ENTPD5O75356 428 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 TXNDC12O95881 172 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 B4GALT1P15291 398 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 PAX7P23759 505 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 KRTAP1-1Q07627 177 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 CLEC12AQ5QGZ9 265 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 KLHL17Q6TDP4 642 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 CD300LDQ6UXZ3 194 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 ADCK1Q86TW2 530 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 DTX2Q86UW9 622 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 HIPK1Q86Z02 1210 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 CCDC36Q8IYA8 594 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 HS3ST5Q8IZT8 346 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 CLDN22Q8N7P3 220 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 ATG16L2Q8NAA4 619 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 TRAF4Q9BUZ4 470 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-205ENST00000465238 C1QTNF6Q9BXI9 259 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 REG4Q9BYZ8 158 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 NELFAQ9H3P2 528 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 SMURF2Q9HAU4 748 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 BARX1Q9HBU1 254 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-205ENST00000465238 TBC1D23Q9NUY8 699 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 NPAP1Q9NZP6 1156 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 KIF17Q9P2E2 1029 aa15.43■□□□□ 0.06
COL7A1-205ENST00000465238 CHD3Q12873 2000 aaKnown RBP15.43■□□□□ 0.06
COL7A1-205ENST00000465238 ARPC4-TTLL3A0A0A6YYG9 625 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 SLC22A23A1A5C7 686 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 PRSS37A4D1T9 235 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 H7C1C5 153 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 FARS2O95363 451 aaKnown RBP15.42■□□□□ 0.06
COL7A1-205ENST00000465238 SLC2A10O95528 541 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 IGHV4-39P01824 125 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 CAPZA2P47755 286 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 ZNF83P51522 516 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 ZNF133P52736 654 aaPredicted RBP15.42■□□□□ 0.06
COL7A1-205ENST00000465238 CDH11P55287 796 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 LCN6P62502 163 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 FMODQ06828 376 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 MESTQ5EB52 335 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 C10orf128Q5T292 105 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 SLC25A47Q6Q0C1 308 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 TMEM108Q6UXF1 575 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 ZNF627Q7L945 461 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 JAZF1Q86VZ6 243 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 NSMAFQ92636 917 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 NMD3Q96D46 503 aaKnown RBP15.42■□□□□ 0.06
COL7A1-205ENST00000465238 CENPNQ96H22 339 aaPredicted RBP15.42■□□□□ 0.06
COL7A1-205ENST00000465238 TSSK6Q9BXA6 273 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 CR1P17927 2039 aa15.42■□□□□ 0.06
COL7A1-205ENST00000465238 G3V2T6 193 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms