RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 FARSAQ9Y285 508 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 XIRP2A4UGR9 3374 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CHD9Q3L8U1 2897 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 TP53BP1Q12888 1972 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 NPIPA5A0A0B4J1W7 369 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 A0A1W2PQM1 296 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 NPIPA5E9PKD4 350 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 NPIPA3F8WFD2 350 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 H3BNH8 94 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 M0R036 132 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 SC5DO75845 299 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 OR2F2O95006 317 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 CA3P07451 260 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 C1GALT1C1LP0DN25 315 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 IL9P15248 144 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF44P15621 663 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 AMD1P17707 334 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 GKP32189 559 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 PPOXP50336 477 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 ACLYP53396 1101 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 TAS2R50P59544 299 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 ERVK11-1P61568 191 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 PIGFQ07326 219 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 SURF2Q15527 256 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 NEDD8Q15843 81 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 DUOXA1Q1HG43 343 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM90A2PQ658T7 463 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF770Q6IQ21 691 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 ACSM6Q6P461 480 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 LCLAT1Q6UWP7 414 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 DRAM2Q6UX65 266 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 CENPVQ7Z7K6 275 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 BAP18Q8IXM2 172 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 C4orf19Q8IY42 314 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 OR6V1Q8N148 313 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 LRRC52Q8N7C0 313 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 LRRC75AQ8NAA5 344 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 SIDT2Q8NBJ9 832 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 OR4K2Q8NGD2 314 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 OR5K1Q8NHB7 308 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC7A6Q92536 515 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 TOMM40LQ969M1 308 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM19Q96HH6 336 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 CELF6Q96J87 481 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 FCRL1Q96LA6 429 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 WRAP53Q9BUR4 548 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 C20orf24Q9BUV8 137 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 CHST5Q9GZS9 411 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 SRD5A3Q9H8P0 318 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 MSL2Q9HCI7 577 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 RANGRFQ9HD47 186 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 GDF3Q9NR23 364 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM207AQ9NSI2 230 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC2A8Q9NY64 477 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 CD207Q9UJ71 328 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF391Q9UJN7 358 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC25A13Q9UJS0 675 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 NPIPA1Q9UND3 350 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 HSPB11Q9Y547 144 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 CHD7Q9P2D1 2997 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 NFASCO94856 1347 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 ZDBF2Q9HCK1 2354 aa4.32□□□□□ -1.72
CCDC88A-209ENST00000456975 PPIAL4EA0A075B759 164 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 A0A087WXM4 84 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PPIAL4CA0A0B4J2A2 164 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CCDC195A0A1B0GUA6 201 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 GAGE10A6NGK3 116 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 EPOPA6NHQ4 379 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 C17orf105B2RV13 164 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 SEC14L6B5MCN3 397 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PPIAL4DF5H284 164 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 GFYI3L273 518 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 M0R3G1 203 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 LEFTY2O00292 366 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CYB561D2O14569 222 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RAB29O14966 203 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 CCL25O15444 150 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RAD51DO75771 328 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 IGSF6O95976 241 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 HPP00738 406 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 HPRP00739 348 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TFP02787 698 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PLA2G1BP04054 148 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PPIAL4FP0DN26 164 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 ARSAP15289 507 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 SPNP16150 400 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TBPP20226 339 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 EDN2P20800 178 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 S100GP29377 79 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 OR1D2P34982 312 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 NPBWR2P48146 333 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RAB5CP51148 216 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 RORCP51449 518 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 MVDP53602 400 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 EEFSECP57772 596 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 LCN2P80188 198 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 TIAL1Q01085 375 aaKnown RBP eCLIP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 MS4A2Q01362 244 aa4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 PPP1R8Q12972 351 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-209ENST00000456975 FOXE3Q13461 319 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms