RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 E2F6O75461 281 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 TIPRLO75663 272 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 DANCRP0C864 163 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 NOS3P29474 1203 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 CDKN2AP42771 156 aaKnown RBP16.2■□□□□ 0.18
SHH-204ENST00000441114 MRPS34P82930 218 aaKnown RBP16.2■□□□□ 0.18
SHH-204ENST00000441114 SLC36A2Q495M3 483 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 TMEM53Q6P2H8 277 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 PTCHD4Q6ZW05 846 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 JAZF1Q86VZ6 243 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 OR52L1Q8NGH7 329 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 PERPQ96FX8 193 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 SYT4Q9H2B2 425 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 SIAEQ9HAT2 523 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 PDP1Q9P0J1 537 aaPredicted RBP16.2■□□□□ 0.18
SHH-204ENST00000441114 CREBBPQ92793 2442 aa16.2■□□□□ 0.18
SHH-204ENST00000441114 SLC16A7O60669 478 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 TXNDC12O95881 172 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 IGFBP1P08833 259 aaPredicted RBP16.19■□□□□ 0.18
SHH-204ENST00000441114 ZNF14P17017 642 aaPredicted RBP16.19■□□□□ 0.18
SHH-204ENST00000441114 HOXB6P17509 224 aaKnown RBP16.19■□□□□ 0.18
SHH-204ENST00000441114 NPR2P20594 1047 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 CENPAP49450 140 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 SLC35F1Q5T1Q4 408 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 LEG1Q6P5S2 330 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 RASSF6Q6ZTQ3 369 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 ASRGL1Q7L266 308 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 FBXL14Q8N1E6 418 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 PAPD5Q8NDF8 572 aaKnown RBP16.19■□□□□ 0.18
SHH-204ENST00000441114 OR4K13Q8NH42 304 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 NABP1Q96AH0 204 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 ZNF75AQ96N20 296 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 NIPSNAP1Q9BPW8 284 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 CXorf56Q9H5V9 222 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 CCNB1IP1Q9NPC3 277 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 TBC1D23Q9NUY8 699 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 FAIMQ9NVQ4 179 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 CDH10Q9Y6N8 788 aa16.19■□□□□ 0.18
SHH-204ENST00000441114 IGHV2OR16-5A0A0B4J2B6 119 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 AHCYL1O43865 530 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 SOX14O95416 240 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 HIST1H1CP16403 213 aaKnown RBP16.18■□□□□ 0.18
SHH-204ENST00000441114 CTLA4P16410 223 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 LAP3P28838 519 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 TTKP33981 857 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 CDKN1AP38936 164 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 CCNIQ14094 377 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 TESK1Q15569 626 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 NRN1LQ496H8 165 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 AGAP6Q5VW22 663 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 OTPQ5XKR4 325 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 RPL13AP3Q6NVV1 102 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 ADCK1Q86TW2 530 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 HS3ST5Q8IZT8 346 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 OR8D4Q8NGM9 314 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 NMNAT3Q96T66 252 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 FEVQ99581 238 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 DGCR6LQ9BY27 220 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 PLA2G12AQ9BZM1 189 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 EMC7Q9NPA0 242 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 VSX1Q9NZR4 365 aaPredicted RBP16.18■□□□□ 0.18
SHH-204ENST00000441114 DNAJB9Q9UBS3 223 aa16.18■□□□□ 0.18
SHH-204ENST00000441114 COA3Q9Y2R0 106 aaPredicted RBP16.18■□□□□ 0.18
SHH-204ENST00000441114 CSMD1Q96PZ7 3565 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 KHDRBS3O75525 346 aaKnown RBP16.17■□□□□ 0.18
SHH-204ENST00000441114 RENP00797 406 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 CD8AP01732 235 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 SCG5P05408 212 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 APEHP13798 732 aaKnown RBP16.17■□□□□ 0.18
SHH-204ENST00000441114 ZNF32P17041 273 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 GSTM3P21266 225 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 PRKACGP22612 351 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 NKX6-1P78426 367 aaPredicted RBP16.17■□□□□ 0.18
SHH-204ENST00000441114 HSF2Q03933 536 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 HGFACQ04756 655 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 PLP2Q04941 152 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 DBPQ10586 325 aaPredicted RBP16.17■□□□□ 0.18
SHH-204ENST00000441114 GK3PQ14409 553 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 KRT80Q6KB66 452 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 DPPA2Q7Z7J5 298 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 LURAP1LQ8IV03 231 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 ZNF584Q8IVC4 421 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 MUC15Q8N387 334 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 SDR9C7Q8NEX9 313 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 IL17RDQ8NFM7 739 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 OR4F15Q8NGB8 312 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 OR52E2Q8NGJ4 325 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 IGFBPL1Q8WX77 278 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 UTP4Q969X6 686 aaKnown RBP16.17■□□□□ 0.18
SHH-204ENST00000441114 FBXO17Q96EF6 278 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 TSSK2Q96PF2 358 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 TRAF4Q9BUZ4 470 aaPredicted RBP16.17■□□□□ 0.18
SHH-204ENST00000441114 TSSK6Q9BXA6 273 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 NUAK2Q9H093 628 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 CXXC4Q9H2H0 198 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 FN3KQ9H479 309 aa16.17■□□□□ 0.18
SHH-204ENST00000441114 SRA1Q9HD15 236 aaKnown RBP16.17■□□□□ 0.18
SHH-204ENST00000441114 PRRC2AP48634 2157 aaKnown RBP16.17■□□□□ 0.18
SHH-204ENST00000441114 IQCMA0A1B0GVH7 501 aa16.16■□□□□ 0.18
SHH-204ENST00000441114 ARPC3O15145 178 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms