RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 USP51Q70EK9 711 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 SHFQ7M4L6 423 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 ZBTB46Q86UZ6 589 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 LSRQ86X29 649 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 OR6V1Q8N148 313 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ZNF786Q8N393 782 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ZNF610Q8N9Z0 462 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 STEAP2Q8NFT2 490 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 MYDGFQ969H8 173 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 MUCL1Q96DR8 90 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ZNF582Q96NG8 517 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 CNN2Q99439 309 aaKnown RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 FOXB1Q99853 325 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 OPN3Q9H1Y3 402 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 RNF121Q9H920 327 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 MED20Q9H944 212 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 PRSS50Q9UI38 385 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 COA3Q9Y2R0 106 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 PHYHO14832 338 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ENTPD6O75354 484 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 WNT11O96014 354 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 HRGP04196 525 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 GYPBP06028 91 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 GNAO1P09471 354 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 HOXB1P14653 301 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 CTLA4P16410 223 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 MYL12AP19105 171 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 PYCR1P32322 319 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 PEX19P40855 299 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 CXCR4P61073 352 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ISL1P61371 349 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ACTC1P68032 377 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ACTA1P68133 377 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 FMODQ06828 376 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 CDK5R2Q13319 367 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 C1QTNF12Q5T7M4 302 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 TMEM53Q6P2H8 277 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 SLC25A47Q6Q0C1 308 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 NHLRC1Q6VVB1 395 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 SLC16A14Q7RTX9 510 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 CCDC71Q8IV32 467 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 ERI1Q8IV48 349 aaKnown RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 ALDH16A1Q8IZ83 802 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 STX19Q8N4C7 294 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ZNF808Q8N4W9 903 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 NAXEQ8NCW5 288 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ZNF540Q8NDQ6 660 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 C1orf162Q8NEQ5 155 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 BPIFB6Q8NFQ5 453 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 CCDC120Q96HB5 630 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 INTS14Q96SY0 518 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 MNTQ99583 582 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 TEAD3Q99594 435 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 YTHDF1Q9BYJ9 559 aaKnown RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 SIAEQ9HAT2 523 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ZNF226Q9NYT6 803 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 FAM171A2A8MVW0 826 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 M0R129 80 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 AGFG2O95081 481 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 PTHP01270 115 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 UQCRFS1P47985 274 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 LSM6P62312 80 aaKnown RBP8.9□□□□□ -0.98
CD44-207ENST00000425428 MRPS34P82930 218 aaKnown RBP8.9□□□□□ -0.98
CD44-207ENST00000425428 PLP2Q04941 152 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 RAB40BQ12829 278 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 C6orf141Q5SZD1 244 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 C9orf135Q5VTT2 229 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 AADACL4Q5VUY2 407 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 LRFN4Q6PJG9 635 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 BHLHA15Q7RTS1 189 aaPredicted RBP8.9□□□□□ -0.98
CD44-207ENST00000425428 P2RY8Q86VZ1 359 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 C17orf78Q8N4C9 275 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 MARVELD2Q8N4S9 558 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 OR51L1Q8NGJ5 315 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 LILRB4Q8NHJ6 448 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 CNIH3Q8TBE1 160 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 IPCEF1Q8WWN9 437 aaPredicted RBP8.9□□□□□ -0.98
CD44-207ENST00000425428 PTP4A1Q93096 173 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 RNFT2Q96EX2 444 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 TSSK2Q96PF2 358 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 NMNAT2Q9BZQ4 307 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 HAO2Q9NYQ3 351 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 LAMP5Q9UJQ1 280 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 FBXL3Q9UKT7 428 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 MYRFQ9Y2G1 1151 aa8.9□□□□□ -0.98
CD44-207ENST00000425428 FAM90A27PA6NNH2 459 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 A8MXE2 369 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 ZNF670-ZNF695F2Z2N8 137 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 C16orf97H3BN30 126 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 C1QL1O75973 258 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 UBL3O95164 117 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 RAB36O95755 333 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 SPARCP09486 303 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 CCDC159P0C7I6 412 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 PPP3CBP16298 524 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 ARR3P36575 388 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 CD79BP40259 229 aa8.89□□□□□ -0.99
CD44-207ENST00000425428 ENTPD1P49961 510 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms