RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 THEM4Q5T1C6 240 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 ARMC4Q5T2S8 1044 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 INTS11Q5TA45 600 aaKnown RBP9.86□□□□□ -0.83
USP4-204ENST00000416417 REP15Q6BDI9 236 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 SHQ1Q6PI26 577 aaKnown RBP9.86□□□□□ -0.83
USP4-204ENST00000416417 USP51Q70EK9 711 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 SLC30A8Q8IWU4 369 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 ZNF101Q8IZC7 436 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 OR51F2Q8NH61 342 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 ZNF519Q8TB69 540 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 SNX33Q8WV41 574 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 TMEM239Q8WW34 195 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 NABP1Q96AH0 204 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 ZNF416Q9BWM5 594 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 ZNF665Q9H7R5 613 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 CCNB1IP1Q9NPC3 277 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 RHCGQ9UBD6 479 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 IGHV1-69-2A0A0G2JMI3 117 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 SLC22A23A1A5C7 686 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 C5orf49A4QMS7 147 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 MRASO14807 208 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 ADRA2CP18825 462 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 DRD4P21917 467 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 STOMP27105 288 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 RAD52P43351 418 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 CD47Q08722 323 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 CYLC2Q14093 348 aaPredicted RBP9.85□□□□□ -0.83
USP4-204ENST00000416417 UGT2A3Q6UWM9 527 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 SEMA6DQ8NFY4 1073 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 OR1J2Q8NGS2 313 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 C10orf82Q8WW14 230 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 IPCEF1Q8WWN9 437 aaPredicted RBP9.85□□□□□ -0.83
USP4-204ENST00000416417 LRRC58Q96CX6 371 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 NMD3Q96D46 503 aaKnown RBP9.85□□□□□ -0.83
USP4-204ENST00000416417 TPD52L3Q96J77 140 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 ZNF583Q96ND8 569 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 SEPHS2Q99611 448 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 ECSITQ9BQ95 431 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 GRIP1Q9Y3R0 1128 aa9.85□□□□□ -0.83
USP4-204ENST00000416417 LOC100653049A0A140TA62 436 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 HMGB1P1B2RPK0 211 aaPredicted RBP9.84□□□□□ -0.83
USP4-204ENST00000416417 PLPP2O43688 288 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 KRT34O76011 436 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 OR5F1O95221 314 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 MPZL1O95297 269 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 SNAP29O95721 258 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 IGHV1-46P01743 117 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 SCG5P05408 212 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 PCMT1P22061 227 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 CRYBB2P43320 205 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 DAP3P51398 398 aaKnown RBP9.84□□□□□ -0.83
USP4-204ENST00000416417 ZNF81P51508 661 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 MRPS11P82912 194 aaKnown RBP9.84□□□□□ -0.83
USP4-204ENST00000416417 PSG4Q00888 419 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 MMEL1Q495T6 779 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 CYBRD1Q53TN4 286 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 C10orf128Q5T292 105 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 OTPQ5XKR4 325 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 SLC25A47Q6Q0C1 308 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 C12orf54Q6X4T0 127 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 RFPL4BQ6ZWI9 263 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 SLC25A40Q8TBP6 338 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 TSPEARQ8WU66 669 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 POM121L2Q96KW2 1035 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 BCL2L14Q9BZR8 327 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 WNT5BQ9H1J7 359 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 SIAEQ9HAT2 523 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 G6PC2Q9NQR9 355 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 DECR2Q9NUI1 292 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 DCAF16Q9NXF7 216 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 SLCO1C1Q9NYB5 712 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 GPR160Q9UJ42 338 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 MED31Q9Y3C7 131 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 WIPI2Q9Y4P8 454 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 SNX13Q9Y5W8 968 aa9.84□□□□□ -0.83
USP4-204ENST00000416417 TRAV27A0A087WT01 109 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 ZSCAN5BA6NJL1 495 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 H7C1C5 153 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 J3KTA2 159 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 ENTPD5O75356 428 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 DEAF1O75398 565 aaPredicted RBP9.83□□□□□ -0.84
USP4-204ENST00000416417 PNPP00491 289 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 NGFP01138 241 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 PTHP01270 115 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 IGHV3-13P01766 116 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 IFI30P13284 250 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 CFPP27918 469 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 LAP3P28838 519 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 RBM34P42696 430 aaKnown RBP9.83□□□□□ -0.84
USP4-204ENST00000416417 ZNF133P52736 654 aaPredicted RBP9.83□□□□□ -0.84
USP4-204ENST00000416417 LCN6P62502 163 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 MRPS34P82930 218 aaKnown RBP9.83□□□□□ -0.84
USP4-204ENST00000416417 KLF10Q13118 480 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 ALG10Q5BKT4 473 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 CGB2Q6NT52 195 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 ACSM5Q6NUN0 579 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 DPPA2Q7Z7J5 298 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 OR51A7Q8NH64 312 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 RASSF5Q8WWW0 418 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 GEMIN6Q8WXD5 167 aaKnown RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms