RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PLEKHA1Q9HB21 404 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 MRM2Q9UI43 246 aaKnown RBP13.33□□□□□ -0.28
USP4-203ENST00000415188 LAMP5Q9UJQ1 280 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 AK6Q9Y3D8 172 aaKnown RBP13.33□□□□□ -0.28
USP4-203ENST00000415188 ETV7Q9Y603 341 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 FKBP7Q9Y680 259 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 TMEM72A0PK05 275 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 C7orf66A4D0T2 115 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 CDC14CA4D256 554 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 TMEM212A6NML5 194 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 IFITM5A6NNB3 132 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 A8MV72 311 aaPredicted RBP13.32□□□□□ -0.28
USP4-203ENST00000415188 XKRYO14609 159 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 PIN1P1O15428 100 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 MAGEB4O15481 346 aaPredicted RBP13.32□□□□□ -0.28
USP4-203ENST00000415188 ARHGEF9O43307 516 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 LANCL1O43813 399 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 FADS1O60427 444 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 NPIPB7O75200 414 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 SERPINI2O75830 405 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 ZFPL1O95159 310 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 C1QBP02746 253 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 F13BP05160 661 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 RAB40ALP0C0E4 278 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 PRKCAP17252 672 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 ABCD3P28288 659 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 MNDAP41218 407 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 SUMO3P55854 103 aaPredicted RBP13.32□□□□□ -0.28
USP4-203ENST00000415188 TLE1Q04724 770 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 RASGEF1BQ0VAM2 473 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 MAB21L1Q13394 359 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 SF3B4Q15427 424 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP4-203ENST00000415188 SLC36A2Q495M3 483 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 CCDC92Q53HC0 331 aaPredicted RBP13.32□□□□□ -0.28
USP4-203ENST00000415188 FAM69AQ5T7M9 428 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 PRAMEF17Q5VTA0 474 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 FDX2Q6P4F2 183 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 ASB18Q6ZVZ8 466 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 MARCH3Q86UD3 253 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 GHDCQ8N2G8 530 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 ASCC1Q8N9N2 400 aaKnown RBP13.32□□□□□ -0.28
USP4-203ENST00000415188 LGALS14Q8TCE9 139 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 SMIM4Q8WVI0 70 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 RAB40AQ8WXH6 277 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 RNF166Q96A37 237 aaPredicted RBP13.32□□□□□ -0.28
USP4-203ENST00000415188 MAP6Q96JE9 813 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 DMRTB1Q96MA1 342 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 INTS14Q96SY0 518 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 COMMD4Q9H0A8 199 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 MRPL39Q9NYK5 338 aaKnown RBP13.32□□□□□ -0.28
USP4-203ENST00000415188 ZNF346Q9UL40 294 aaKnown RBP13.32□□□□□ -0.28
USP4-203ENST00000415188 KCNMB2Q9Y691 235 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 V9GY05 133 aa13.32□□□□□ -0.28
USP4-203ENST00000415188 IGLV3-12A0A075B6K2 115 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 TMED7-TICAM2A0A0A6YYA0 188 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 A8MVM7 634 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 PRR32B1ATL7 298 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 PRKNO60260 465 aaPredicted RBP13.31□□□□□ -0.28
USP4-203ENST00000415188 OR8G3PP0DMU2 310 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 TFPIP10646 304 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 ALOX5APP20292 161 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 EVI2BP34910 448 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 BTCP35070 178 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 AGFG1P52594 562 aaKnown RBP13.31□□□□□ -0.28
USP4-203ENST00000415188 SLC26A5P58743 744 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 NANOS3P60323 173 aaKnown RBP13.31□□□□□ -0.28
USP4-203ENST00000415188 RPS18P62269 152 aaKnown RBP13.31□□□□□ -0.28
USP4-203ENST00000415188 CD83Q01151 205 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 VWA2Q5GFL6 755 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 LIPNQ5VXI9 398 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 RHBDD2Q6NTF9 364 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 PLCZ1Q86YW0 608 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 GPR119Q8TDV5 335 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 TMEM234Q8WY98 164 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 RGP1Q92546 391 aaPredicted RBP13.31□□□□□ -0.28
USP4-203ENST00000415188 ACTR6Q9GZN1 396 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 SRA1Q9HD15 236 aaKnown RBP13.31□□□□□ -0.28
USP4-203ENST00000415188 TAS2R10Q9NYW0 307 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 VSX1Q9NZR4 365 aaPredicted RBP13.31□□□□□ -0.28
USP4-203ENST00000415188 EMC3Q9P0I2 261 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 MKL2Q9ULH7 1088 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 RBMX2Q9Y388 322 aaKnown RBP13.31□□□□□ -0.28
USP4-203ENST00000415188 TMED7Q9Y3B3 224 aa13.31□□□□□ -0.28
USP4-203ENST00000415188 EXPH5Q8NEV8 1989 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 TRBV5-7A0A0A0MS05 114 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 A0A1W2PPK0 400 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 NAP1L6A6NFF2 107 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 K7EM74 188 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 OR2T1O43869 369 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 SUSD5O60279 629 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 ZNF254O75437 659 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 SCRG1O75711 98 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 ECDO95905 644 aaPredicted RBP13.3□□□□□ -0.28
USP4-203ENST00000415188 DPP4P27487 766 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 GZMKP49863 264 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 EFNA3P52797 238 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 DLX5P56178 289 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 AP3S2P59780 193 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 RPL27P61353 136 aaKnown RBP13.3□□□□□ -0.28
USP4-203ENST00000415188 MFSD13AQ14CX5 517 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms