RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 MRPS33Q9Y291 106 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-203ENST00000412148 KIR2DS5A0A0G2JLQ3 304 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 A0A0G2JNG1 304 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 KANTRA0A1W2PQU2 76 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 TMEM72A0PK05 275 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR5H14A6NHG9 310 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 DBX1A6NMT0 343 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 KIR2DS3K7RE56 304 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 EML2O95834 649 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 RLN2P04090 185 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 CLPSP04118 112 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ITGA5P08648 1049 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR8G3PP0DMU2 310 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 RNH1P13489 461 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 GTF2F2P13984 249 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ZBTB25P24278 435 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 CTNNB1P35222 781 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 POU3F4P49335 361 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 MAZP56270 477 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 HSD17B7P56937 341 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ERVK-25P63136 954 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 DBPQ10586 325 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 FAM53BQ14153 422 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 KIR2DS5Q14953 304 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 TOMM34Q15785 309 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 C2orf76Q3KRA6 126 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ITPRIPL2Q3MIP1 535 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 MESTQ5EB52 335 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 PRRT3Q5FWE3 981 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF546Q86UE3 836 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 CSNK1A1LQ8N752 337 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 BCORP1Q8N888 145 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 KDF1Q8NAX2 398 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 DTWD2Q8NBA8 298 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 DMBX1Q8NFW5 382 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR51S1Q8NGJ8 323 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR52B4Q8NGK2 314 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR6K6Q8NGW6 343 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ZCCHC10Q8TBK6 192 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 GPBAR1Q8TDU6 330 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 MITD1Q8WV92 249 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR1E3Q8WZA6 343 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 AQP3Q92482 292 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ATOH1Q92858 354 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 RIT1Q92963 219 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ELSPBP1Q96BH3 223 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 TRIM43Q96BQ3 446 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 LAT2Q9GZY6 243 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 LAMP5Q9UJQ1 280 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 MRPS2Q9Y399 296 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 FXYD6-FXYD2A0A087WZ82 144 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 A0A1W2PPC1 479 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR14I1A6ND48 311 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ELOA3DA6NLF2 546 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 LATO43561 262 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ATG12O94817 140 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 TMIGD3P0DMS9 266 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 CD79AP11912 226 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 PPICP45877 212 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 SLC6A9P48067 706 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 CLDN12P56749 244 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 EGR4Q05215 589 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ELOA3BQ3SY89 546 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 SHEQ5VZ18 495 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 DHRS7BQ6IAN0 325 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 C3orf33Q6P1S2 294 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 DGAT2L6Q6ZPD8 337 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 CFAP77Q6ZQR2 320 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 LYG2Q86SG7 212 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ADGRE4PQ86SQ3 457 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 BIVMQ86UB2 503 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 CATSPERDQ86XM0 798 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 THNSL2Q86YJ6 484 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 SERPINA12Q8IW75 414 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 SLC30A7Q8NEW0 376 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ELOA3Q8NG57 546 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR10K1Q8NGX5 313 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF519Q8TB69 540 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ZNF296Q8WUU4 475 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 GCDHQ92947 438 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 FBXW5Q969U6 566 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 MARC2Q969Z3 335 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 TSPAN32Q96QS1 320 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 LPAR4Q99677 370 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 NKX6-2Q9C056 277 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 FXYD6Q9H0Q3 95 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 EXO5Q9H790 373 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 LUZP4Q9P127 313 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 GRHPRQ9UBQ7 328 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 HS3ST3A1Q9Y663 406 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 SYNDIG1LA6NDD5 238 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 IDSB3KWA1 339 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 DISC1C4P0D8 188 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 OR10H2O60403 315 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 NSA2O95478 260 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 RAB3DO95716 219 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 PLGP00747 810 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 BGLAPP02818 100 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 ACHEP22303 614 aa5.18□□□□□ -1.58
CCDC88A-203ENST00000412148 MAOBP27338 520 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms