RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 EEF1E1-BLOC1S5C9J1V9 151 aa15.92■□□□□ 0.14
SDC1-203ENST00000403076 SLC1A7O00341 560 aa15.92■□□□□ 0.14
SDC1-203ENST00000403076 EEF1E1O43324 174 aaKnown RBP15.92■□□□□ 0.14
SDC1-203ENST00000403076 DBTP11182 482 aaKnown RBP15.92■□□□□ 0.14
SDC1-203ENST00000403076 CDAP32320 146 aa15.92■□□□□ 0.14
SDC1-203ENST00000403076 ZNF133P52736 654 aaPredicted RBP15.92■□□□□ 0.14
SDC1-203ENST00000403076 FREM1Q5H8C1 2179 aa15.92■□□□□ 0.14
SDC1-203ENST00000403076 OR10H5Q8NGA6 315 aa15.92■□□□□ 0.14
SDC1-203ENST00000403076 OR51G2Q8NGK0 314 aa15.92■□□□□ 0.14
SDC1-203ENST00000403076 PLCXD1Q9NUJ7 323 aa15.92■□□□□ 0.14
SDC1-203ENST00000403076 COQ3Q9NZJ6 369 aa15.92■□□□□ 0.14
SDC1-203ENST00000403076 TPRKBQ9Y3C4 175 aa15.92■□□□□ 0.14
SDC1-203ENST00000403076 PTGES3LE9PB15 166 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 RPL36A-HNRNPH2H7BZ11 118 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 CNOT4O95628 575 aaKnown RBP15.91■□□□□ 0.14
SDC1-203ENST00000403076 MRPL3P09001 348 aaKnown RBP15.91■□□□□ 0.14
SDC1-203ENST00000403076 ZNF823P16415 610 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 ARF1P84077 181 aaKnown RBP15.91■□□□□ 0.14
SDC1-203ENST00000403076 HSF2Q03933 536 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 C4orf17Q53FE4 359 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 KLHL22Q53GT1 634 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 RBM48Q5RL73 367 aaKnown RBP15.91■□□□□ 0.14
SDC1-203ENST00000403076 LINC01590Q5TEZ4 76 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 MTFR2Q6P444 385 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 LYPD4Q6UWN0 246 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 Q6ZT83 130 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 BEND4Q6ZU67 534 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 LUZP2Q86TE4 346 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 ERI1Q8IV48 349 aaKnown RBP15.91■□□□□ 0.14
SDC1-203ENST00000403076 ZNF540Q8NDQ6 660 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 FOXB1Q99853 325 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 BLOC1S6Q9UL45 172 aa15.91■□□□□ 0.14
SDC1-203ENST00000403076 ZNF99A8MXY4 864 aaPredicted RBP15.9■□□□□ 0.14
SDC1-203ENST00000403076 MSTNO14793 375 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 SEC14L2O76054 403 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 APOL3O95236 402 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 MPZL1O95297 269 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 CCDC159P0C7I6 412 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 EEF1B2P24534 225 aaKnown RBP15.9■□□□□ 0.14
SDC1-203ENST00000403076 MPGP29372 298 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 NAA10P41227 235 aaPredicted RBP15.9■□□□□ 0.14
SDC1-203ENST00000403076 FOXG1P55316 489 aaPredicted RBP15.9■□□□□ 0.14
SDC1-203ENST00000403076 POU4F2Q12837 409 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 MEP1BQ16820 701 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 OTPQ5XKR4 325 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 UGT2A3Q6UWM9 527 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 ZNF813Q6ZN06 617 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 HTRA1Q92743 480 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 KISS1RQ969F8 398 aaPredicted RBP15.9■□□□□ 0.14
SDC1-203ENST00000403076 CCDC120Q96HB5 630 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 CNN2Q99439 309 aaKnown RBP15.9■□□□□ 0.14
SDC1-203ENST00000403076 YTHDF1Q9BYJ9 559 aaKnown RBP15.9■□□□□ 0.14
SDC1-203ENST00000403076 HAO2Q9NYQ3 351 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 ERRFI1Q9UJM3 462 aaPredicted RBP15.9■□□□□ 0.14
SDC1-203ENST00000403076 MYRFQ9Y2G1 1151 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 UGT2A1Q9Y4X1 527 aa15.9■□□□□ 0.14
SDC1-203ENST00000403076 CIB4A0PJX0 185 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 EFCAB10A6NFE3 127 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 SELENOFO60613 162 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 TFP02787 698 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 CHN2P52757 468 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 ADAM8P78325 824 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 MRPS34P82930 218 aaKnown RBP15.89■□□□□ 0.13
SDC1-203ENST00000403076 TGFBR3Q03167 851 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 STK11Q15831 433 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 AHSA2Q719I0 299 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 LIX1LQ8IVB5 337 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 SLC26A10Q8NG04 563 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 OR6N2Q8NGY6 317 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 ASB5Q8WWX0 329 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 C11orf40Q8WZ69 217 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 GGHQ92820 318 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 LGALS12Q96DT0 336 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 INTS14Q96SY0 518 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 CDADC1Q9BWV3 514 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 NELFAQ9H3P2 528 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 EMC7Q9NPA0 242 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 POLE4Q9NR33 117 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 TMEM38BQ9NVV0 291 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 TAS2R16Q9NYV7 291 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 POLR1DQ9Y2S0 133 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 FAM208BQ5VWN6 2430 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 IRGMA1A4Y4 181 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 FARS2O95363 451 aaKnown RBP15.89■□□□□ 0.13
SDC1-203ENST00000403076 FADS2O95864 444 aaKnown RBP15.89■□□□□ 0.13
SDC1-203ENST00000403076 B4GALT1P15291 398 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 NPR2P20594 1047 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 MSR1P21757 451 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 CRHBPP24387 322 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 CHRNB4P30926 498 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 SH3BGRP55822 239 aaPredicted RBP15.89■□□□□ 0.13
SDC1-203ENST00000403076 ADORA2A-AS1P86434 159 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 SHFQ7M4L6 423 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 MRGPRGQ86SM5 289 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 LRRC18Q8N456 261 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 STX19Q8N4C7 294 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 OR4F15Q8NGB8 312 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 RHNO1Q9BSD3 238 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 WDR76Q9H967 626 aa15.89■□□□□ 0.13
SDC1-203ENST00000403076 SIAEQ9HAT2 523 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms