RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TMEM184BQ9Y519 407 aaPredicted RBP18.96■□□□□ 0.63
CTCF-202ENST00000401394 PLRG1O43660 514 aaKnown RBP18.95■□□□□ 0.62
CTCF-202ENST00000401394 CD14P08571 375 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 GPR143P51810 404 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 FOXL2P58012 376 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 SERTAD2Q14140 314 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 GUCA2BQ16661 112 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 CORO6Q6QEF8 472 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 CBLN2Q8IUK8 224 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 OR1J4Q8NGS1 313 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 BAHD1Q8TBE0 780 aaPredicted RBP18.95■□□□□ 0.62
CTCF-202ENST00000401394 TAAR8Q969N4 342 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 CMTM3Q96MX0 182 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 ZNF416Q9BWM5 594 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 CRISPLD2Q9H0B8 497 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 BARX1Q9HBU1 254 aaPredicted RBP18.95■□□□□ 0.62
CTCF-202ENST00000401394 TAS2R4Q9NYW5 299 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 SPACA6W5XKT8 324 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 DENND4AQ7Z401 1863 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 TMEM82A0PJX8 343 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 OR5H14A6NHG9 310 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 NPIPB9F8W1W9 429 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 SLC25A12O75746 678 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 PBX2P40425 430 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 MECP2P51608 486 aaKnown RBP18.95■□□□□ 0.62
CTCF-202ENST00000401394 KIR2DS3Q14952 304 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 TMPPEQ6ZT21 453 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 MED25Q71SY5 747 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 LRRC75AQ8NAA5 344 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 ACBD4Q8NC06 268 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 CASTOR1Q8WTX7 329 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 BADQ92934 168 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 SEH1LQ96EE3 360 aa18.95■□□□□ 0.62
CTCF-202ENST00000401394 ZNF768Q9H5H4 540 aaKnown RBP18.95■□□□□ 0.62
CTCF-202ENST00000401394 RAB3DO95716 219 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 SLC35E2P0CK97 266 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 CAPZA1P52907 286 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 ZNF776Q68DI1 518 aaPredicted RBP18.94■□□□□ 0.62
CTCF-202ENST00000401394 C3orf33Q6P1S2 294 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 PARM1Q6UWI2 310 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 C12orf45Q8N5I9 185 aaPredicted RBP18.94■□□□□ 0.62
CTCF-202ENST00000401394 SLC6A7Q99884 636 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 PDCD10Q9BUL8 212 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 MMP25Q9NPA2 562 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 ADH1BP00325 375 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 TACSTD2P09758 323 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 ATPAF1Q5TC12 328 aaPredicted RBP18.94■□□□□ 0.62
CTCF-202ENST00000401394 ZNF550Q7Z398 422 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 OR1S2Q8NGQ3 325 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 GPR148Q8TDV2 347 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 VRK1Q99986 396 aaPredicted RBP18.94■□□□□ 0.62
CTCF-202ENST00000401394 HEBP2Q9Y5Z4 205 aa18.94■□□□□ 0.62
CTCF-202ENST00000401394 TUBAL3A6NHL2 446 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 TNFSF14O43557 240 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 EIF4E2O60573 245 aaKnown RBP18.93■□□□□ 0.62
CTCF-202ENST00000401394 SPARCP09486 303 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 STARP49675 285 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 UBE2IP63279 158 aaKnown RBP18.93■□□□□ 0.62
CTCF-202ENST00000401394 DHRS2Q13268 280 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 ALG11Q2TAA5 492 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 DNM1P46Q6ZS02 220 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 RNF144BQ7Z419 303 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 HSD17B13Q7Z5P4 300 aaPredicted RBP18.93■□□□□ 0.62
CTCF-202ENST00000401394 FAM160A2Q8N612 972 aaPredicted RBP18.93■□□□□ 0.62
CTCF-202ENST00000401394 OR6K3Q8NGY3 331 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 ROBO4Q8WZ75 1007 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 CMKLR1Q99788 373 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 NOP16Q9Y3C1 178 aaKnown RBP18.93■□□□□ 0.62
CTCF-202ENST00000401394 SLCO1B1Q9Y6L6 691 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 TRBV5-7A0A0A0MS05 114 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 A6NCN8 305 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 PRAMEF2O60811 474 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 CSF2RBP32927 897 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 SLC35D3Q5M8T2 416 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 JMJD6Q6NYC1 403 aaPredicted RBP18.93■□□□□ 0.62
CTCF-202ENST00000401394 EID2Q8N6I1 236 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 SLC22A18Q96BI1 424 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 C4orf45Q96LM5 186 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 RABL2AQ9UBK7 228 aaPredicted RBP18.93■□□□□ 0.62
CTCF-202ENST00000401394 CLDN16Q9Y5I7 305 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 C2orf16Q68DN1 1984 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 WIPF3A6NGB9 483 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 RFPL4AA6NLU0 287 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 RFPL4AL1F8VTS6 287 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 ZNF10P21506 573 aaPredicted RBP18.93■□□□□ 0.62
CTCF-202ENST00000401394 CALCRP30988 508 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 SDHAP31040 664 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 OR2W3Q7Z3T1 314 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 BHLHE23Q8NDY6 225 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 MCHR2Q969V1 340 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 PCDHB16Q9NRJ7 776 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 MSRAQ9UJ68 235 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 TMED7Q9Y3B3 224 aa18.93■□□□□ 0.62
CTCF-202ENST00000401394 CPED1A4D0V7 1026 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 APODP05090 189 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 CSF1P09603 554 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 TACR3P29371 465 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 FAUP35544 74 aaKnown RBP18.92■□□□□ 0.62
CTCF-202ENST00000401394 KIR2DL1P43626 348 aaPredicted RBP18.92■□□□□ 0.62
CTCF-202ENST00000401394 PPM1FP49593 454 aaPredicted RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms