RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 GSKIPQ9P0R6 139 aa13.15□□□□□ -0.3
TCOF1-202ENST00000377797 SERPINA5P05154 406 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 HTR2CP28335 458 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 BDKRB2P30411 391 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 BDH1Q02338 343 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 LRRC37A5PQ49AS3 106 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 NPSR1Q6W5P4 371 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 LRRC69Q6ZNQ3 347 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 SMIM19Q96E16 107 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 FBXL4Q9UKA2 621 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 B9D1Q9UPM9 204 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 MEIOCA2RUB1 952 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 ZNF736B4DX44 427 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-202ENST00000377797 SF3B4Q15427 424 aaKnown RBP eCLIP13.14□□□□□ -0.319e-7■■■■□ 20
TCOF1-202ENST00000377797 LIX1LQ8IVB5 337 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 PLPP7Q8NBV4 271 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 ACBD4Q8NC06 268 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 SNIP1Q8TAD8 396 aaKnown RBP13.14□□□□□ -0.31
TCOF1-202ENST00000377797 PIGCQ92535 297 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 ZNF501Q96CX3 271 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-202ENST00000377797 RBM38Q9H0Z9 239 aaKnown RBP13.14□□□□□ -0.31
TCOF1-202ENST00000377797 HDGFL3Q9Y3E1 203 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 LIMS3P0CW19 117 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 LIMS4P0CW20 117 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 NKX2-5P52952 324 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-202ENST00000377797 DMWDQ09019 674 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 EIF3IQ13347 325 aaKnown RBP13.14□□□□□ -0.31
TCOF1-202ENST00000377797 RAB12Q6IQ22 244 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 ZNF679Q8IYX0 411 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 LIN7BQ9HAP6 207 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 POU2F3Q9UKI9 436 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 B3GALT1Q9Y5Z6 326 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 A0A0X1KG70 313 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 NAP1L6A6NFF2 107 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 ZNF81P51508 661 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 RPS18P62269 152 aaKnown RBP13.14□□□□□ -0.31
TCOF1-202ENST00000377797 UBE2NLQ5JXB2 153 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 WDR5BQ86VZ2 330 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 MFSD8Q8NHS3 518 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 MOGAT1Q96PD6 335 aa13.14□□□□□ -0.31
TCOF1-202ENST00000377797 TSPAN4O14817 238 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 UBL3O95164 117 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 MT-ND4P03905 459 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 GALNSP34059 522 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 CSNK2A3Q8NEV1 391 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 OR5D18Q8NGL1 313 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 OXGR1Q96P68 337 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 PLEKHJ1Q9NW61 149 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 APC2O95996 2303 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 IGHV3-15A0A0B4J1V0 119 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 S100A6P06703 90 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 SMIM10L1P0DMW3 83 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 TGM4P49221 684 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 GLYATL3Q5SZD4 288 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 THEM4Q5T1C6 240 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 FAM27D1Q5T7N8 215 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 AADACL4Q5VUY2 407 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 OR8H3Q8N146 312 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 OR4M1Q8NGD0 313 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 OR5H2Q8NGV7 314 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 SMIM10Q96HG1 83 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 FKBP14Q9NWM8 211 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 KLF13Q9Y2Y9 288 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-202ENST00000377797 RHBDD3Q9Y3P4 386 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 STMND1H3BQB6 276 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 CSF1P09603 554 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 ABOP16442 354 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 CASP6P55212 293 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 IL10RAQ13651 578 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 LYSMD2Q8IV50 215 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 NUBPLQ8TB37 319 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 SLAMF6Q96DU3 332 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 FBXO8Q9NRD0 319 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 KCNIP3Q9Y2W7 256 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 HRH3Q9Y5N1 445 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 HRO43593 1189 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 CD53P19397 219 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 HLA-DMAP28067 261 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 MYBPHQ13203 477 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 CNN3Q15417 329 aaKnown RBP13.13□□□□□ -0.31
TCOF1-202ENST00000377797 TOMM34Q15785 309 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-202ENST00000377797 SWI5Q1ZZU3 235 aa13.13□□□□□ -0.31
TCOF1-202ENST00000377797 ZNF845Q96IR2 970 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-202ENST00000377797 PAQR5Q9NXK6 330 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-202ENST00000377797 A0A087WZY1 265 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 OR6C68A6NDL8 312 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 ARPC1BO15143 372 aaKnown RBP13.12□□□□□ -0.31
TCOF1-202ENST00000377797 ATF4P18848 351 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-202ENST00000377797 SERPINA2P20848 420 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 S100A10P60903 97 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 LSMEM1Q8N8F7 131 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 OR2Y1Q8NGV0 311 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 GPA33Q99795 319 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 SPEF1Q9Y4P9 236 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 PCDHGA3Q9Y5H0 932 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 TEX51A0A1B0GUA7 166 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 ZNF587BE7ETH6 402 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 SCGB1D2O95969 90 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 AKR1C4P17516 323 aa13.12□□□□□ -0.31
TCOF1-202ENST00000377797 NOVA1P51513 510 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms