RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 WDR5BQ86VZ2 330 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 NAXDQ8IW45 347 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 LILRA2Q8N149 483 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 OR2G3Q8NGZ4 309 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 OR10J5Q8NHC4 309 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 TRMT61AQ96FX7 289 aaKnown RBP12.6□□□□□ -0.39
COL4A1-201ENST00000375820 MS4A8Q9BY19 250 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 TMEM221A6NGB7 291 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 MYF5P13349 255 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 CNR1P21554 472 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 LAP3P28838 519 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 LIM2P55344 173 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 CREB3L2Q70SY1 520 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 CNTN4Q8IWV2 1026 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 RNF113BQ8IZP6 322 aaKnown RBP12.59□□□□□ -0.39
COL4A1-201ENST00000375820 NXPE3Q969Y0 559 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 PRELID3BQ9Y3B1 194 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 DNAJC25-GNG10A0A024R161 153 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 LOC100289279A0A1B0GTE1 492 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 MBLAC1A4D2B0 266 aaPredicted RBP12.59□□□□□ -0.39
COL4A1-201ENST00000375820 PRAMEF25A6NGN4 478 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 CLDN24A6NM45 220 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 PCSK6P29122 969 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 CYB561P49447 251 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 PSMB3P49720 205 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 REEP5Q00765 189 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 MLF2Q15773 248 aaPredicted RBP12.59□□□□□ -0.39
COL4A1-201ENST00000375820 LDLRAD1Q5T700 205 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 NXNL2Q5VZ03 156 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 NKAIN4Q8IVV8 208 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 ZNF583Q96ND8 569 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 OR52A5Q9H2C5 316 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 MOKQ9UQ07 419 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 ATP23Q9Y6H3 246 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 RPS27P42677 84 aaKnown RBP12.59□□□□□ -0.39
COL4A1-201ENST00000375820 VASH2Q86V25 355 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 LILRB4Q8NHJ6 448 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 OR51E1Q8TCB6 317 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 ST8SIA2Q92186 375 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 HPNP05981 417 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 NAGAP17050 411 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 RPL7L1Q6DKI1 246 aaKnown RBP12.59□□□□□ -0.39
COL4A1-201ENST00000375820 PARM1Q6UWI2 310 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 GAREM2Q75VX8 874 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 YIPF5Q969M3 257 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 KNDC1Q76NI1 1749 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 TMX2-CTNND1H3BSU7 103 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 PDGFAP04085 211 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 UBE2IP63279 158 aaKnown RBP12.59□□□□□ -0.39
COL4A1-201ENST00000375820 MRPS21P82921 87 aaKnown RBP12.59□□□□□ -0.39
COL4A1-201ENST00000375820 LRRC26Q2I0M4 334 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 PHYHD1Q5SRE7 291 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 ZADH2Q8N4Q0 377 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 FER1L6-AS2Q96M78 137 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 TAF9BQ9HBM6 251 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 NPFFR2Q9Y5X5 522 aa12.59□□□□□ -0.39
COL4A1-201ENST00000375820 CSF3P09919 207 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 NTF3P20783 257 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 HTR1FP30939 366 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 MAP2K6P52564 334 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 C1orf140Q5VVS0 124 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 ZNF626Q68DY1 528 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 TMEM123Q8N131 208 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 OR10X1Q8NGY0 326 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 FAM122AQ96E09 287 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 R3HDMLQ9H3Y0 253 aa12.58□□□□□ -0.39
COL4A1-201ENST00000375820 hCG_1809904A0A1W2PP81 198 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 A0A1W2PPE2 198 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 A0A1W2PR64 198 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 SLC5A10A0PJK1 596 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 LRIT2A6NDA9 550 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 HRO43593 1189 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 IAPPP10997 89 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 ELK1P19419 428 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 DPY19L2P2Q6ZN68 376 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 MAVSQ7Z434 540 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 BARHL1Q9BZE3 327 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 NT5DC2Q9H857 520 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 CRLF2Q9HC73 371 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 SLC5A6Q9Y289 635 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 CHST2Q9Y4C5 530 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 C20orf202A1L168 122 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 ADAM23O75077 832 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 ALOX12BO75342 701 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 OR2J3O76001 311 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 PI3P19957 117 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 PFN3P60673 137 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 TEKQ02763 1124 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 OR13C5Q8NGS8 318 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 C14orf79Q96F83 325 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 ZCCHC4Q9H5U6 513 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 BARX1Q9HBU1 254 aaPredicted RBP12.58□□□□□ -0.4
COL4A1-201ENST00000375820 A0A0B4J203 849 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 LRRC30A6NM36 301 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 SDCBPO00560 298 aaPredicted RBP12.58□□□□□ -0.4
COL4A1-201ENST00000375820 SSSCA1O60232 199 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 RRADP55042 308 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 VWA2Q5GFL6 755 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 ADGRE4PQ86SQ3 457 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 ZFP62Q8NB50 900 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms