RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 NUP54Q7Z3B4 507 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 CPEB2Q7Z5Q1 589 aaKnown RBP12.52□□□□□ -0.41
TRIM4-201ENST00000349062 GALNT6Q8NCL4 622 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 DUSP18Q8NEJ0 188 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 DIABLOQ9NR28 239 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 KLHL13Q9P2N7 655 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 RABL2BQ9UNT1 228 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 A0A1W2PPL8 197 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 CFDP00746 253 aaPredicted RBP12.52□□□□□ -0.41
TRIM4-201ENST00000349062 SLC6A8P48029 635 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 ZNF41P51814 821 aaPredicted RBP12.52□□□□□ -0.41
TRIM4-201ENST00000349062 EIF2B1Q14232 305 aaKnown RBP12.52□□□□□ -0.41
TRIM4-201ENST00000349062 TIGD3Q6B0B8 471 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 RPL22L1Q6P5R6 122 aaKnown RBP12.52□□□□□ -0.41
TRIM4-201ENST00000349062 RHBDD1Q8TEB9 315 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 MS4A3Q96HJ5 214 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 GNRHR2Q96P88 292 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 PRO3102Q9H379 93 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 ZMAT3Q9HA38 289 aaKnown RBP12.52□□□□□ -0.41
TRIM4-201ENST00000349062 FRRS1LQ9P0K9 344 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 PILRBQ9UKJ0 227 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 FBXL3Q9UKT7 428 aa12.52□□□□□ -0.41
TRIM4-201ENST00000349062 ARPC3O15145 178 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 SMAD9O15198 467 aaKnown RBP12.51□□□□□ -0.41
TRIM4-201ENST00000349062 PIN1P1O15428 100 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 PITPNBP48739 271 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 PNLIPRP2P54317 469 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 GPR85P60893 370 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 FAM122BQ7Z309 247 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 TMEM156Q8N614 296 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 OR4K17Q8NGC6 315 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 MED18Q9BUE0 208 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 LIN7BQ9HAP6 207 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 CACNG2Q9Y698 323 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 DCDC2BA2VCK2 349 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 A8MVM7 634 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 RAF1P04049 648 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 PRKXP51817 358 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 DCAF7P61962 342 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 TMEM176BQ3YBM2 270 aaPredicted RBP12.51□□□□□ -0.41
TRIM4-201ENST00000349062 YOD1Q5VVQ6 348 aaPredicted RBP12.51□□□□□ -0.41
TRIM4-201ENST00000349062 PLPP7Q8NBV4 271 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 RAB33BQ9H082 229 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 PCED1AQ9H1Q7 454 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 DPAGT1Q9H3H5 408 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 METTL17Q9H7H0 456 aaPredicted RBP12.51□□□□□ -0.41
TRIM4-201ENST00000349062 INPP5EQ9NRR6 644 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 FLVCR2Q9UPI3 526 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 ZNF281Q9Y2X9 895 aa12.51□□□□□ -0.41
TRIM4-201ENST00000349062 TRABD2BA6NFA1 517 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 RGS11O94810 467 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 TACSTD2P09758 323 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 EPXP11678 715 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 ZNF823P16415 610 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 CDAP32320 146 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 TSPAN5P62079 268 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 TMEM225Q6GV28 225 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 WDFY1Q8IWB7 410 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 ZBTB44Q8NCP5 570 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 CDV3Q9UKY7 258 aaKnown RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 LY6G6EA0A0G2JKS1 128 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 ZNF879B4DU55 563 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 LGALS8O00214 317 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 TRIM3O75382 744 aaPredicted RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 SERPINA3P01011 423 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 IFNA7P01567 189 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 TMIGD3P0DMS9 266 aaPredicted RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 BIDP55957 195 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 RPS4XP62701 263 aaKnown RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 PLA2G7Q13093 441 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 RSPO4Q2I0M5 234 aaPredicted RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 STPG1Q5TH74 334 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 GRINAQ7Z429 371 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 PRSS42Q7Z5A4 293 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 FAM71CQ8NEG0 241 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 COQ8AQ8NI60 647 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 RGP1Q92546 391 aaPredicted RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 KLHL15Q96M94 604 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 MS4A7Q9GZW8 240 aaPredicted RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 RANBP3Q9H6Z4 567 aaPredicted RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 FKBP7Q9Y680 259 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 U3KQA8 63 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 TRAV8-7A0A075B6U6 113 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 VSTM2BA6NLU5 285 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 M0R233 179 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 BGLAPP02818 100 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 RPL27P61353 136 aaKnown RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 INSM1Q01101 510 aaPredicted RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 OC90Q02509 493 aaPredicted RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 SLC16A9Q7RTY1 509 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.5□□□□□ -0.41
TRIM4-201ENST00000349062 CREB3L1Q96BA8 519 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 ARRDC1-AS1Q9H2J1 176 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 UBQLN2Q9UHD9 624 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 B9D1Q9UPM9 204 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 EMC9Q9Y3B6 208 aa12.5□□□□□ -0.41
TRIM4-201ENST00000349062 IGKV1D-43A0A0B4J1Z2 117 aa12.49□□□□□ -0.41
TRIM4-201ENST00000349062 PRSS37A4D1T9 235 aa12.49□□□□□ -0.41
TRIM4-201ENST00000349062 FADS1O60427 444 aa12.49□□□□□ -0.41
TRIM4-201ENST00000349062 ITGA10O75578 1167 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms