RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MED29Q9NX70 200 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 A0A1W2PQ09 198 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 BTBD17A6NE02 478 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 NPIPB8E9PQR5 432 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 GRPP07492 148 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 CCL3P10147 92 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 CD59P13987 128 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 COX6B1P14854 86 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 CEACAM16Q2WEN9 425 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 TMEM205Q6UW68 189 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 C16orf47Q6ZP98 133 aaPredicted RBP9.17□□□□□ -0.94
USP54-201ENST00000339859 C9orf40Q8IXQ3 194 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 TFAP2CQ92754 450 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 SF3B5Q9BWJ5 86 aaKnown RBP9.17□□□□□ -0.94
USP54-201ENST00000339859 SLC25A18Q9H1K4 315 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 GMPR2Q9P2T1 348 aaKnown RBP9.17□□□□□ -0.94
USP54-201ENST00000339859 CYB5BO43169 146 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 FBXO45P0C2W1 286 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 HIST1H1CP16403 213 aaKnown RBP9.17□□□□□ -0.94
USP54-201ENST00000339859 ETV5P41161 510 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 IKZF1Q13422 519 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 IQCF2Q8IXL9 164 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 OR5AS1Q8N127 324 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 ASCC1Q8N9N2 400 aaKnown RBP9.17□□□□□ -0.94
USP54-201ENST00000339859 GLTPQ9NZD2 209 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 PTTG3PQ9NZH4 202 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 HIF3AQ9Y2N7 669 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 CDX4O14627 284 aaPredicted RBP9.17□□□□□ -0.94
USP54-201ENST00000339859 WDR1O75083 606 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 SEC14L2O76054 403 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 B4GALT1P15291 398 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 ACHEP22303 614 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 PTPN6P29350 595 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 CDK10Q15131 360 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 ZNF321PQ8N8H1 164 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 HTRA1Q92743 480 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 KTI12Q96EK9 354 aaPredicted RBP9.17□□□□□ -0.94
USP54-201ENST00000339859 SLC25A19Q9HC21 320 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 DIMT1Q9UNQ2 313 aaKnown RBP9.17□□□□□ -0.94
USP54-201ENST00000339859 ANK1P16157 1881 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 MCRIP1C9JLW8 97 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 VAMP1P23763 118 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 CD96P40200 585 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 LGALS4P56470 323 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 YIF1BQ5BJH7 314 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 FHL5Q5TD97 284 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 KDM4DQ6B0I6 523 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 MINDY2Q8NBR6 621 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 TBC1D15Q8TC07 691 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 TAAR8Q969N4 342 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 SYT3Q9BQG1 590 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 B3GNT3Q9Y2A9 372 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 POLDIP2Q9Y2S7 368 aa9.17□□□□□ -0.94
USP54-201ENST00000339859 CD3EP07766 207 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 SPI1P17947 270 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 RAC3P60763 192 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 EGR3Q06889 387 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 AQP6Q13520 282 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 SLC22A6Q4U2R8 563 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 UGT2A3Q6UWM9 527 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 ZNF511Q8NB15 262 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 FCRL1Q96LA6 429 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 SIRT3Q9NTG7 399 aaPredicted RBP9.16□□□□□ -0.94
USP54-201ENST00000339859 RHBDL2Q9NX52 303 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 AASSQ9UDR5 926 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 STEAP1Q9UHE8 339 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 PRR19A6NJB7 356 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 M0R135 149 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 WISP3O95389 354 aaPredicted RBP9.16□□□□□ -0.94
USP54-201ENST00000339859 COX6A1P12074 109 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 MAKP20794 623 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 FABP6P51161 128 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 SWI5Q1ZZU3 235 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 CMTM1Q8IZ96 169 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 GTPBP8Q8N3Z3 284 aaPredicted RBP9.16□□□□□ -0.94
USP54-201ENST00000339859 NKAIN3Q8N8D7 197 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 OR52H1Q8NGJ2 320 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 C12orf43Q96C57 262 aaKnown RBP9.16□□□□□ -0.94
USP54-201ENST00000339859 ZNF799Q96GE5 643 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 CCDC120Q96HB5 630 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 ASH2LQ9UBL3 628 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 MGAT4AQ9UM21 535 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 AK6Q9Y3D8 172 aaKnown RBP9.16□□□□□ -0.94
USP54-201ENST00000339859 H3BSA7 217 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 FAM157BP0CG42 384 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 SHBQ15464 509 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 PXKQ7Z7A4 578 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 TMED4Q7Z7H5 227 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 TPRA1Q86W33 373 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 CALHM3Q86XJ0 350 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 TMEM151AQ8N4L1 468 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 ATF6BQ99941 703 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 TRAPPC4Q9Y296 219 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 IGKV1-8A0A0C4DH67 115 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 SPINK2P20155 84 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 BMXP51813 675 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 ZNF45Q02386 682 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 P2RY14Q15391 338 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 ANKRD16Q6P6B7 361 aa9.16□□□□□ -0.94
USP54-201ENST00000339859 LHFPL2Q6ZUX7 228 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms