RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HRGP04196 525 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 INHBBP09529 407 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 SDHBP21912 280 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 TGM4P49221 684 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 ENTPD1P49961 510 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 LHX2P50458 406 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 CLRN1P58418 232 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 CAMK2DQ13557 499 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 TRAM1Q15629 374 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 TEX30Q5JUR7 227 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 C22orf42Q6IC83 251 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 ARL9Q6T311 187 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 TMEM91Q6ZNR0 172 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 OR9K2Q8NGE7 335 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 OR10D3Q8NH80 312 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 HAVCR2Q8TDQ0 301 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 SMIM19Q96E16 107 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 KCTD7Q96MP8 289 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 FOXN4Q96NZ1 517 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 DCLRE1CQ96SD1 692 aaKnown RBP13.76□□□□□ -0.21
LIMS1-202ENST00000338045 NXF2Q9GZY0 626 aaKnown RBP13.76□□□□□ -0.21
LIMS1-202ENST00000338045 ACKR4Q9NPB9 350 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 KCNG2Q9UJ96 466 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 WASF3Q9UPY6 502 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 GSTK1Q9Y2Q3 226 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 KIAA1549Q9HCM3 1950 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 METTL15A6NJ78 407 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF726A6NNF4 738 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 CXCL13O43927 109 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 RPS27P42677 84 aaKnown RBP13.76□□□□□ -0.21
LIMS1-202ENST00000338045 CLDN17P56750 224 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 PPIAP62937 165 aaKnown RBP13.76□□□□□ -0.21
LIMS1-202ENST00000338045 FOXC1Q12948 553 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 MRPL28Q13084 256 aaKnown RBP13.76□□□□□ -0.21
LIMS1-202ENST00000338045 CBX3Q13185 183 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 RPL22L1Q6P5R6 122 aaKnown RBP13.76□□□□□ -0.21
LIMS1-202ENST00000338045 SLC25A47Q6Q0C1 308 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-202ENST00000338045 SLC22A16Q86VW1 577 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 GLB1L2Q8IW92 636 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 UBQLNLQ8IYU4 475 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF454Q8N9F8 522 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 ZIC4Q8N9L1 334 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 ASB17Q8WXJ9 295 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 CPNE4Q96A23 557 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-202ENST00000338045 MED18Q9BUE0 208 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 CDADC1Q9BWV3 514 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 HDHD5Q9BXW7 423 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 CSAG2Q9Y5P2 127 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 HSPB2A8KAH6 182 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 NPIPA2E9PIF3 369 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 NPIPA3F8WFD2 350 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 TLX3O43711 291 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-202ENST00000338045 UPK3AO75631 287 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 SC5DO75845 299 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF432O94892 652 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 MPZL1O95297 269 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 IL1AP01583 271 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 TACSTD2P09758 323 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 RPS19P39019 145 aaKnown RBP13.75□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF133P52736 654 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-202ENST00000338045 CLDN18P56856 261 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 ADAM8P78325 824 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 ROM1Q03395 351 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 HSPB2Q16082 182 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 MOGQ16653 247 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 ABLIM2Q6H8Q1 611 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 SLC18B1Q6NT16 456 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 TRILQ7L0X0 811 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 FAM109AQ8N4B1 249 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF385AQ96PM9 386 aaKnown RBP13.75□□□□□ -0.21
LIMS1-202ENST00000338045 AMELYQ99218 206 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 SLC6A15Q9H2J7 730 aa13.75□□□□□ -0.21
LIMS1-202ENST00000338045 DCHS1Q96JQ0 3298 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF716A6NP11 495 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 PSMD9O00233 223 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 KLK10O43240 276 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 RGS9O75916 674 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-202ENST00000338045 KRT8P05787 483 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 OR8G3PP0DMU2 310 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 NR2C1P13056 603 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF708P17019 499 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 EIF1AXP47813 144 aaKnown RBP13.74□□□□□ -0.21
LIMS1-202ENST00000338045 SLC3A1Q07837 685 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 BCL2A1Q16548 175 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 MEP1BQ16820 701 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF404Q494X3 552 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 PDSS1Q5T2R2 415 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 LIPNQ5VXI9 398 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 OTPQ5XKR4 325 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 TMEM123Q8N131 208 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 MS4A15Q8N5U1 240 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 THEM6Q8WUY1 208 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 GHSRQ92847 366 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 MCHR2Q969V1 340 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 OR2M2Q96R28 347 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 OR8B4Q96RC9 309 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 SMAD5Q99717 465 aaKnown RBP13.74□□□□□ -0.21
LIMS1-202ENST00000338045 MMP27Q9H306 513 aa13.74□□□□□ -0.21
LIMS1-202ENST00000338045 TIGARQ9NQ88 270 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms