RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 THBS1P07996 1170 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 ANGPTL5Q86XS5 388 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 ENTHD1Q8IYW4 607 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 SLC22A24Q8N4F4 322 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 OR10J5Q8NHC4 309 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 KCNG3Q8TAE7 436 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 EPHX3Q9H6B9 360 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 FAM221AA4D161 298 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 PPP3CBP16298 524 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 TAGLN2P37802 199 aaKnown RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 GRB2P62993 217 aaKnown RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 RAC1P63000 192 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 IAH1Q2TAA2 248 aaPredicted RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 ZNF626Q68DY1 528 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 FAM174AQ8TBP5 190 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 TIMD4Q96H15 378 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 ACSS1Q9NUB1 689 aaPredicted RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 TRGV8A0A0C4DH27 118 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 MYF5P13349 255 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 UBE2IP63279 158 aaKnown RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 YOD1Q5VVQ6 348 aaPredicted RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.6□□□□□ -0.55
SDC3-201ENST00000336798 ZNF768Q9H5H4 540 aaKnown RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 CLEC2LP0C7M8 214 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 T-ENOLP0DO92 83 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 ACTBL2Q562R1 376 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 NAXDQ8IW45 347 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 NUDT8Q8WV74 236 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 PATE1Q8WXA2 126 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 FAM122AQ96E09 287 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 C6orf106Q9H6K1 298 aaPredicted RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 NPAP1Q9NZP6 1156 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 ARNTLO00327 626 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 FURINP09958 794 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 ASTLQ6HA08 431 aaPredicted RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 SIGIRRQ6IA17 410 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 NRARPQ7Z6K4 114 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 SIAH3Q8IW03 269 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 NIPSNAP1Q9BPW8 284 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 WSB2Q9NYS7 404 aaPredicted RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 ZNF701M0R085 212 aaPredicted RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 B4GALT3O60512 393 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 HOXC13P31276 330 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 STEAP1BQ6NZ63 245 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 TMEM182Q6ZP80 229 aaPredicted RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 ZNF534Q76KX8 674 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 OR52H1Q8NGJ2 320 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 OR52I1Q8NGK6 324 aa11.6□□□□□ -0.55
SDC3-201ENST00000336798 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.6□□□□□ -0.55
SDC3-201ENST00000336798 FAM208AQ9UK61 1670 aaKnown RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 A0A1W2PNR3 127 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 OR2T7P0C7T2 308 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 KIR2DL3P43628 341 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 Q499Y3 187 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 RPL7L1Q6DKI1 246 aaKnown RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 NXPE3Q969Y0 559 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 CPPED1Q9BRF8 314 aaPredicted RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 SEC22CQ9BRL7 303 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 RIMS4Q9H426 269 aaPredicted RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 PDLIM7Q9NR12 457 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 CLCF1Q9UBD9 225 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 MOKQ9UQ07 419 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 SNX11Q9Y5W9 270 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 ZNF142P52746 1687 aaPredicted RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 SLC5A10A0PJK1 596 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 MBLAC1A4D2B0 266 aaPredicted RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 OR5K3A6NET4 321 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 K7EQM0 130 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 OR2J3O76001 311 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 CSNK1DP48730 415 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 PRAMEF5Q5TYX0 476 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 PRAMEF6Q5VXH4 476 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 LILRA2Q8N149 483 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 C10orf90Q96M02 699 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 EGLN1Q9GZT9 426 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 KIAA1456Q9P272 454 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 FABP1P07148 127 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 DHRS4L1P0CG22 281 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 LIM2P55344 173 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 ACKR1Q16570 336 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 CLPPQ16740 277 aaPredicted RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 C1orf140Q5VVS0 124 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 RNF113BQ8IZP6 322 aaKnown RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 ZBED3Q96IU2 234 aaPredicted RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 MAP6Q96JE9 813 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 SLC46A1Q96NT5 459 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 OR2M2Q96R28 347 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 SCPEP1Q9HB40 452 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 PIK3C2AO00443 1686 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 DNAJC25-GNG10A0A024R161 153 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 C5orf49A4QMS7 147 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 FITM1A5D6W6 292 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 ABCD4O14678 606 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 SEMG1P04279 462 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 POU2F2P09086 479 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 CSF3P09919 207 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 CLDN10P78369 228 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 REEP5Q00765 189 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 FAM3DQ96BQ1 224 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 GPR78Q96P69 363 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms