RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 AMBRA1Q9C0C7 1298 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 GABRQQ9UN88 632 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 PIGLQ9Y2B2 252 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 NSG2Q9Y328 171 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 P2RY10O00398 339 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 TERTO14746 1132 aaKnown RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 TCAPO15273 167 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 MMP7P09237 267 aaPredicted RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 PTAFRP25105 342 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 RPS19P39019 145 aaKnown RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 MAMDC4Q6UXC1 1216 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 SLC38A6Q8IZM9 456 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 DTD2Q96FN9 168 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 SSSCA1O60232 199 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 LGI1O95970 557 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 OR5M10Q6IEU7 315 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 UQCC3Q6UW78 93 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 CISD2Q8N5K1 135 aaKnown RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 DYNC2LI1Q8TCX1 351 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 GPR119Q8TDV5 335 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 WDR83Q9BRX9 315 aaKnown RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 RAB6CQ9H0N0 254 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 PRSS16Q9NQE7 514 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 PTRH2Q9Y3E5 179 aaKnown RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 XRN1Q8IZH2 1706 aaKnown RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 SYT5O00445 386 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 POU3F3P20264 500 aaPredicted RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 BIDP55957 195 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 DMWDQ09019 674 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 AMIGO3Q86WK7 504 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 NEURL3Q96EH8 262 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 TNFRSF13CQ96RJ3 184 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 GNB4Q9HAV0 340 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 ACSM4P0C7M7 580 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 LIPAP38571 399 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 P2RY2P41231 377 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 MRPL19P49406 292 aaKnown RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 UBE2IP63279 158 aaKnown RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 PIANPQ8IYJ0 282 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 ZFP62Q8NB50 900 aaPredicted RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 NKX6-3A6NJ46 265 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 ARNTP27540 789 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 CDC20Q12834 499 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 ISL2Q96A47 359 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM129A0AVI4 362 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 H0YIV9 168 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 PIPP12273 146 aaPredicted RBP12.79□□□□□ -0.36
CSPG4-201ENST00000308508 CD1EP15812 388 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 FABP9Q0Z7S8 132 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 OR8B8Q15620 311 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 GLIPR1L1Q6UWM5 242 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 PET117Q6UWS5 81 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF534Q76KX8 674 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 NANOGP1Q8N7R0 232 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 OR5K2Q8NHB8 316 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF480Q8WV37 535 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 SMIM7Q9BQ49 75 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 NDUFB11Q9NX14 153 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 OR52A4PA6NMU1 304 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 ADIPOR2Q86V24 386 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 ANGPTL5Q86XS5 388 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 TP53INP2Q8IXH6 220 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 LILRA2Q8N149 483 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 CCDC74AQ96AQ1 378 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM38AQ9H6F2 299 aa12.79□□□□□ -0.36
CSPG4-201ENST00000308508 GLCEO94923 617 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 C1orf220Q5T0J3 134 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 MED18Q9BUE0 208 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 H7C1C5 153 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 ICAM2P13598 275 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 MTHFD2P13995 350 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 FCGR2CP31995 323 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 TFAP2EQ6VUC0 442 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 GRINAQ7Z429 371 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM123Q8N131 208 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 ANGPTL6Q8NI99 470 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 TMED6Q8WW62 240 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 PLEKHA2Q9HB19 425 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 PARD6AQ9NPB6 346 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 CCSO14618 274 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 NCR3LG1Q68D85 454 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM88Q6PEY1 159 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM25Q86YD3 366 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 MFSD9Q8NBP5 474 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM104Q8NE00 496 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 CNIH1O95406 144 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 MAP2K6P52564 334 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM176BQ3YBM2 270 aaPredicted RBP12.78□□□□□ -0.36
CSPG4-201ENST00000308508 Q6ZSR6 202 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 PRSS45Q7RTY3 260 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF680Q8NEM1 530 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 OR2AE1Q8NHA4 323 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 CORINQ9Y5Q5 1042 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 SERINC4A6NH21 518 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 UNCXA6NJT0 531 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 DEGS1O15121 323 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 ABOP16442 354 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 ETFRF1Q6IPR1 90 aa12.78□□□□□ -0.36
CSPG4-201ENST00000308508 AKR7LQ8NHP1 331 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms