RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 EGR3Q06889 387 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 PPP1R1CQ8WVI7 109 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 ORAI1Q96D31 301 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 IL23AQ9NPF7 189 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 ABI3Q9P2A4 366 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 ELF5Q9UKW6 265 aaPredicted RBP17.67■□□□□ 0.42
USP48-201ENST00000308271 KCNE3Q9Y6H6 103 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 DUX1O43812 170 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 CTNSO60931 367 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 KLK3P07288 261 aaPredicted RBP17.66■□□□□ 0.42
USP48-201ENST00000308271 NPY4RP50391 375 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 GALNT16Q8N428 558 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 TP53I13Q8NBR0 393 aaPredicted RBP17.66■□□□□ 0.42
USP48-201ENST00000308271 NINJ1Q92982 152 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 RPH3AQ9Y2J0 694 aaPredicted RBP17.66■□□□□ 0.42
USP48-201ENST00000308271 DOCK1Q14185 1865 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 TMEM235A6NFC5 223 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 TRIM64BA6NI03 449 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 IGHG1P01857 330 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 CD80P33681 288 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 SERPINF1P36955 418 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 P4HA3Q7Z4N8 544 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 DND1Q8IYX4 353 aaKnown RBP17.66■□□□□ 0.42
USP48-201ENST00000308271 MALSU1Q96EH3 234 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 SCMH1Q96GD3 660 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 RNF170Q96K19 258 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 ZNF223Q9UK11 482 aaPredicted RBP17.66■□□□□ 0.42
USP48-201ENST00000308271 A0A087WV62 115 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 ECI1P42126 302 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 TMEM81Q6P7N7 255 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 KDM8Q8N371 416 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 OR2A1Q8NGT9 310 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 OR1S1Q8NH92 325 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 HAS2Q92819 552 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 RBM24Q9BX46 236 aaKnown RBP17.66■□□□□ 0.42
USP48-201ENST00000308271 GPATCH2Q9NW75 528 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 WSB2Q9NYS7 404 aaPredicted RBP17.66■□□□□ 0.42
USP48-201ENST00000308271 SIGLEC7Q9Y286 467 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 CA5BQ9Y2D0 317 aa17.66■□□□□ 0.42
USP48-201ENST00000308271 PCYT1BQ9Y5K3 369 aaPredicted RBP17.66■□□□□ 0.42
USP48-201ENST00000308271 HBE1P02100 147 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 CBR1P16152 277 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 PLP2Q04941 152 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 IL10RAQ13651 578 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 LFNGQ8NES3 379 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 PELI1Q96FA3 418 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 ERVH48-1M5A8F1 160 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 SERPINE2P07093 398 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 CPN1P15169 458 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 BLVRBP30043 206 aaPredicted RBP17.65■□□□□ 0.42
USP48-201ENST00000308271 RPL23AP62750 156 aaKnown RBP17.65■□□□□ 0.42
USP48-201ENST00000308271 LAIR1Q6GTX8 287 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 FJX1Q86VR8 437 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 ALG14Q96F25 216 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 ELF4Q99607 663 aaPredicted RBP17.65■□□□□ 0.42
USP48-201ENST00000308271 OR10A2Q9H208 303 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.65■□□□□ 0.42
USP48-201ENST00000308271 JTBO76095 146 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 UTS2O95399 124 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 MT-ATP6P00846 226 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 HOXC12P31275 282 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 MPPED2Q15777 294 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 SLC36A2Q495M3 483 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 OR11H7Q8NGC8 314 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 OR14A16Q8NHC5 309 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 ZFPM2Q8WW38 1151 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 CMSS1Q9BQ75 279 aaKnown RBP17.65■□□□□ 0.42
USP48-201ENST00000308271 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.65■□□□□ 0.42
USP48-201ENST00000308271 TAS2R4Q9NYW5 299 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 C7orf66A4D0T2 115 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 GLSO94925 669 aaPredicted RBP17.65■□□□□ 0.42
USP48-201ENST00000308271 CD160O95971 181 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 LCATP04180 440 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 CTSLP07711 333 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 ZNF626Q68DY1 528 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 OPN5Q6U736 354 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 PLXDC1Q8IUK5 500 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 OR2G2Q8NGZ5 317 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 GPR137Q96N19 417 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 OR11A1Q9GZK7 315 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 ZNF304Q9HCX3 659 aa17.65■□□□□ 0.42
USP48-201ENST00000308271 HCRTR1O43613 425 aa17.64■□□□□ 0.42
USP48-201ENST00000308271 TRAPPC6AO75865 159 aa17.64■□□□□ 0.42
USP48-201ENST00000308271 RBM39Q14498 530 aaKnown RBP17.64■□□□□ 0.42
USP48-201ENST00000308271 SSX2Q16385 188 aa17.64■□□□□ 0.42
USP48-201ENST00000308271 FAM69BQ5VUD6 431 aa17.64■□□□□ 0.42
USP48-201ENST00000308271 RAET1LQ5VY80 246 aa17.64■□□□□ 0.42
USP48-201ENST00000308271 LYG2Q86SG7 212 aa17.64■□□□□ 0.42
USP48-201ENST00000308271 TEX19Q8NA77 164 aa17.64■□□□□ 0.42
USP48-201ENST00000308271 IL21Q9HBE4 155 aa17.64■□□□□ 0.42
USP48-201ENST00000308271 SPHK1Q9NYA1 384 aa17.64■□□□□ 0.42
USP48-201ENST00000308271 SMCO3A2RU48 225 aa17.64■□□□□ 0.41
USP48-201ENST00000308271 PPP1R2P9O14990 202 aa17.64■□□□□ 0.41
USP48-201ENST00000308271 GPR137BO60478 399 aa17.64■□□□□ 0.41
USP48-201ENST00000308271 NSA2O95478 260 aaKnown RBP17.64■□□□□ 0.41
USP48-201ENST00000308271 TBPP20226 339 aa17.64■□□□□ 0.41
USP48-201ENST00000308271 KIAA0141Q14154 515 aaPredicted RBP17.64■□□□□ 0.41
USP48-201ENST00000308271 LGALSLQ3ZCW2 172 aaPredicted RBP17.64■□□□□ 0.41
USP48-201ENST00000308271 HIST2H3AQ71DI3 136 aa17.64■□□□□ 0.41
USP48-201ENST00000308271 KIAA0907Q7Z7F0 614 aaPredicted RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms