RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CD22P20273 847 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 TEAD1P28347 426 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 TEKQ02763 1124 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 OR52W1Q6IF63 320 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 IDO2Q6ZQW0 420 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 DPPA2Q7Z7J5 298 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 RBM45Q8IUH3 476 aaKnown RBP17.56■□□□□ 0.4
UPF1-201ENST00000262803 SLCO4A1Q96BD0 722 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 OR2A14Q96R47 310 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 ZIC5Q96T25 663 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 ARPC5LQ9BPX5 153 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 C1QTNF3Q9BXJ4 246 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 TNFRSF12AQ9NP84 129 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 CHRNA9Q9UGM1 479 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 MED16Q9Y2X0 877 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 BEX5Q5H9J7 111 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 H1FXQ92522 213 aaKnown RBP17.56■□□□□ 0.4
UPF1-201ENST00000262803 TRPM3Q9HCF6 1732 aaPredicted RBP17.56■□□□□ 0.4
UPF1-201ENST00000262803 TJP1Q07157 1748 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 GFYI3L273 518 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 RPL35P42766 123 aaKnown RBP17.56■□□□□ 0.4
UPF1-201ENST00000262803 SUMO3P55854 103 aaPredicted RBP17.56■□□□□ 0.4
UPF1-201ENST00000262803 NKAIN2Q5VXU1 208 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 PAQR8Q8TEZ7 354 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 SLC25A37Q9NYZ2 338 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 DAPP1Q9UN19 280 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 HEPHL1Q6MZM0 1159 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 OR1E3Q8WZA6 343 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 SMIM3Q9BZL3 60 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 NDRG3Q9UGV2 375 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 ARRB2P32121 409 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 PPICP45877 212 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 OVCH1Q7RTY7 1134 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 MDGA2Q7Z553 956 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 SHARPINQ9H0F6 387 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 PMS2P2O95744 297 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 FUCA1P04066 466 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 PIPP12273 146 aaPredicted RBP17.55■□□□□ 0.4
UPF1-201ENST00000262803 NID1P14543 1247 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 AADACP22760 399 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 PLPP5Q8NEB5 264 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 EMG1Q92979 244 aaKnown RBP17.55■□□□□ 0.4
UPF1-201ENST00000262803 MBOAT4Q96T53 435 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 MKRN2OSH3BPM6 223 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 DEGS1O15121 323 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 EPHA5P54756 1037 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 SAXO2Q658L1 398 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 SVBPQ8N300 66 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 C15orf54Q8N8G6 183 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 TMEM9BQ9NQ34 198 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 ACER3Q9NUN7 267 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 DUSP13Q9UII6 198 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 RNF24Q9Y225 148 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 UGT2A1Q9Y4X1 527 aa17.55■□□□□ 0.4
UPF1-201ENST00000262803 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.54■□□□□ 0.4
UPF1-201ENST00000262803 ZNF705FA8MVS1 300 aaPredicted RBP17.54■□□□□ 0.4
UPF1-201ENST00000262803 XRCC2O43543 280 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 TUSC2O75896 110 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 ZNF705DP0CH99 300 aaPredicted RBP17.54■□□□□ 0.4
UPF1-201ENST00000262803 ZNF705BP0CI00 300 aaPredicted RBP17.54■□□□□ 0.4
UPF1-201ENST00000262803 CALCBP10092 127 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 RPS19P39019 145 aaKnown RBP17.54■□□□□ 0.4
UPF1-201ENST00000262803 BAXQ07812 192 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 CTU2Q2VPK5 515 aaKnown RBP17.54■□□□□ 0.4
UPF1-201ENST00000262803 PARM1Q6UWI2 310 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 MARCH3Q86UD3 253 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 SPNS2Q8IVW8 549 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 KIF13AQ9H1H9 1805 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 POM121CA8CG34 1229 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 GPR3P46089 330 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 MC2RQ01718 297 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 SYT9Q86SS6 491 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 BAHD1Q8TBE0 780 aaPredicted RBP17.54■□□□□ 0.4
UPF1-201ENST00000262803 SECTM1Q8WVN6 248 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 DUS3LQ96G46 650 aaKnown RBP17.54■□□□□ 0.4
UPF1-201ENST00000262803 FABP7O15540 132 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 SLC6A12P48065 614 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 THEM4Q5T1C6 240 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 ZNF511Q8NB15 262 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 CMTM2Q8TAZ6 248 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 MS4A6EQ96DS6 147 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 ADAMTSL3P82987 1691 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 A0A087WV62 115 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 K7ESM1 405 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 TCRBP04435 133 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 OR8U8P0C7N1 319 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 HLA-DOBP13765 273 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 SLC9A3R2Q15599 337 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 OR1S2Q8NGQ3 325 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 PDXPQ96GD0 296 aa17.54■□□□□ 0.4
UPF1-201ENST00000262803 GPR55Q9Y2T6 319 aaPredicted RBP17.54■□□□□ 0.4
UPF1-201ENST00000262803 A0A0U1RQK1 487 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 P2RY10O00398 339 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 CLDN1O95832 211 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 LINC00299Q6ZSB3 139 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 SAMD10Q9BYL1 202 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 COPS3Q9UNS2 423 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 PIGLQ9Y2B2 252 aa17.53■□□□□ 0.4
UPF1-201ENST00000262803 I6L893 689 aaPredicted RBP17.53■□□□□ 0.4
UPF1-201ENST00000262803 METTL15P1P0C7V9 234 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms