RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MINDY2Q8NBR6 621 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 NOXO1Q8NFA2 376 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 OR5D14Q8NGL3 314 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 PAQR8Q8TEZ7 354 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 SMAP2Q8WU79 429 aaPredicted RBP10.42□□□□□ -0.74
VPS4A-201ENST00000254950 PDCD1LG2Q9BQ51 273 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 URM1Q9BTM9 101 aaKnown RBP10.42□□□□□ -0.74
VPS4A-201ENST00000254950 SH3BGRL2Q9UJC5 107 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 HRH3Q9Y5N1 445 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 LOC101059948A0A1B0GTJ6 334 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 UBE2QL1A1L167 161 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 ART1P52961 327 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 EGR3Q06889 387 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 ZMAT1Q5H9K5 638 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 XAF1Q6GPH4 301 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 OR6S1Q8NH40 331 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 IMMP1LQ96LU5 166 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 GLTPQ9NZD2 209 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 LOC102723996A0A087X1L8 192 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 CDX4O14627 284 aaPredicted RBP10.41□□□□□ -0.74
VPS4A-201ENST00000254950 PTP4A3O75365 173 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 RLN1P04808 185 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 UMODP07911 640 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 TDGF1P13385 188 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 SHC1P29353 583 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 MTNR1BP49286 362 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 GRB2P62993 217 aaKnown RBP10.41□□□□□ -0.74
VPS4A-201ENST00000254950 MFAP5Q13361 173 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 TMEM69Q5SWH9 247 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 TMPRSS7Q7RTY8 843 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 TIPARPQ7Z3E1 657 aaKnown RBP10.41□□□□□ -0.74
VPS4A-201ENST00000254950 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.41□□□□□ -0.74
VPS4A-201ENST00000254950 NAXEQ8NCW5 288 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 OR10D3Q8NH80 312 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 FRMD6Q96NE9 622 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 C12orf49Q9H741 205 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 OR52A1Q9UKL2 312 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 LY6G6EA0A0G2JKS1 128 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 HSPB2A8KAH6 182 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 CRYABP02511 175 aaKnown RBP10.41□□□□□ -0.74
VPS4A-201ENST00000254950 UBCP0CG48 685 aaKnown RBP10.41□□□□□ -0.74
VPS4A-201ENST00000254950 LIMS3P0CW19 117 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 LIMS4P0CW20 117 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 RAB3AP20336 220 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 HSPB2Q16082 182 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 CORO6Q6QEF8 472 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 SHISA5Q8N114 240 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 OR6Q1Q8NGQ2 317 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 SLAMF6Q96DU3 332 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 YIPF6Q96EC8 236 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 OR14A2Q96R54 314 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 U3KQA8 63 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 CEP250Q9BV73 2442 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 SLC22A23A1A5C7 686 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 SLC22A20A6NK97 555 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 NOTOA8MTQ0 251 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 MAGEB4O15481 346 aaPredicted RBP10.41□□□□□ -0.74
VPS4A-201ENST00000254950 NKX2-8O15522 239 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 ECH1Q13011 328 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 OR2M7Q8NG81 312 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 OR52N5Q8NH56 324 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 KCTD12Q96CX2 325 aaKnown RBP10.41□□□□□ -0.74
VPS4A-201ENST00000254950 ATG5Q9H1Y0 275 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 SLC6A15Q9H2J7 730 aa10.41□□□□□ -0.74
VPS4A-201ENST00000254950 GPX5O75715 221 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 IL32P24001 234 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 POU3F4P49335 361 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 EXD3Q8N9H8 876 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 NOX4Q9NPH5 578 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 VCANP13611 3396 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 MASP2O00187 686 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 SGCEO43556 437 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 CD40LGP29965 261 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 CDK5R1Q15078 307 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 CEP78Q5JTW2 689 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 Q8N402 240 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 HGDQ93099 445 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 RFT1Q96AA3 541 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 WACQ9BTA9 647 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 HCAR1Q9BXC0 346 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 TMEM138Q9NPI0 162 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 ABRACLQ9P1F3 81 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 ING1Q9UK53 422 aaPredicted RBP10.4□□□□□ -0.74
VPS4A-201ENST00000254950 ING4Q9UNL4 249 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 EXOGQ9Y2C4 368 aaKnown RBP10.4□□□□□ -0.74
VPS4A-201ENST00000254950 A0A0C4DFX4 3053 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 SNRNP200O75643 2136 aaKnown RBP10.4□□□□□ -0.74
VPS4A-201ENST00000254950 FIGNL2A6NMB9 653 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 CTDSP2O14595 271 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 SP1P08047 785 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 PCSK6P29122 969 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 TSPAN5P62079 268 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 INPP5JQ15735 1006 aaPredicted RBP10.4□□□□□ -0.74
VPS4A-201ENST00000254950 SOWAHCQ53LP3 525 aaPredicted RBP10.4□□□□□ -0.74
VPS4A-201ENST00000254950 BMPERQ8N8U9 685 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 NPEPL1Q8NDH3 523 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 FAM83FQ8NEG4 500 aaPredicted RBP10.4□□□□□ -0.74
VPS4A-201ENST00000254950 ADAMTS14Q8WXS8 1223 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 C11orf40Q8WZ69 217 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 PTP4A1Q93096 173 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms