RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PCBD2Q9H0N5 130 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 MRPS2Q9Y399 296 aaKnown RBP13.03□□□□□ -0.32
SDC1-201ENST00000254351 ZNF736B4DX44 427 aaPredicted RBP13.03□□□□□ -0.32
SDC1-201ENST00000254351 HOXA2O43364 376 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 GPRIN2O60269 458 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 PMS2P2O95744 297 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 WNT11O96014 354 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 F2RL1P55085 397 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 INPP5JQ15735 1006 aaPredicted RBP13.03□□□□□ -0.32
SDC1-201ENST00000254351 GLYATL3Q5SZD4 288 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 RPL13AP3Q6NVV1 102 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 EID2Q8N6I1 236 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 POMGNT2Q8NAT1 580 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 ADAD2Q8NCV1 583 aaKnown RBP13.03□□□□□ -0.32
SDC1-201ENST00000254351 OR5M8Q8NGP6 311 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 STOML3Q8TAV4 291 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 SP7Q8TDD2 431 aaPredicted RBP13.03□□□□□ -0.32
SDC1-201ENST00000254351 DZANK1Q9NVP4 752 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 HAO2Q9NYQ3 351 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 KCNK7Q9Y2U2 307 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 METTL12A8MUP2 240 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 FGF17O60258 216 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 SNRNP70P08621 437 aaKnown RBP13.02□□□□□ -0.32
SDC1-201ENST00000254351 MUC1P15941 1255 aaPredicted RBP13.02□□□□□ -0.32
SDC1-201ENST00000254351 ZNF14P17017 642 aaPredicted RBP13.02□□□□□ -0.32
SDC1-201ENST00000254351 PTAFRP25105 342 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 MRPS10P82664 201 aaKnown RBP13.02□□□□□ -0.32
SDC1-201ENST00000254351 NCMAPQ5T1S8 102 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 PRAMEF8Q5VWM4 474 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 PRAMEF7Q5VXH5 474 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 MDGA2Q7Z553 956 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 ARL11Q969Q4 196 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 SEMA6CQ9H3T2 930 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 TINAGQ9UJW2 476 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.02□□□□□ -0.32
SDC1-201ENST00000254351 INSL6Q9Y581 213 aa13.02□□□□□ -0.32
SDC1-201ENST00000254351 A0A0B4J2E0 115 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 A0A1B0GX12 115 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 hCG_1809904A0A1W2PP81 198 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 A0A1W2PR64 198 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 A0A1W2PRV1 198 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 SULT2B1O00204 365 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 RAB5BP61020 215 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 ILF3Q12906 894 aaKnown RBP eCLIP13.02□□□□□ -0.33
SDC1-201ENST00000254351 ADAM5Q6NVV9 412 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 ANKRD16Q6P6B7 361 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 OR5AP2Q8NGF4 316 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 MRPL48Q96GC5 212 aaKnown RBP13.02□□□□□ -0.33
SDC1-201ENST00000254351 AKR1E2Q96JD6 320 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 GSKIPQ9P0R6 139 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 VSIG4Q9Y279 399 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 HEATR5AQ86XA9 2040 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 CD1CP29017 333 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 RORAP35398 523 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 KLHL26Q53HC5 615 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 ACER2Q5QJU3 275 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 ZNF585AQ6P3V2 769 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 ABHD13Q7L211 337 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 OR51A2Q8NGJ7 313 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 RNF166Q96A37 237 aaPredicted RBP13.02□□□□□ -0.33
SDC1-201ENST00000254351 SEH1LQ96EE3 360 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 ZC3H10Q96K80 434 aaKnown RBP13.02□□□□□ -0.33
SDC1-201ENST00000254351 POTEKPQ9BYX7 375 aa13.02□□□□□ -0.33
SDC1-201ENST00000254351 C11orf98E9PRG8 122 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 HRKO00198 91 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 P2RX6O15547 441 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 VEGFDO43915 354 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 PRNPP04156 253 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 SFTA3P0C7M3 94 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 PEBP1P30086 187 aaKnown RBP13.01□□□□□ -0.33
SDC1-201ENST00000254351 ARHGAP19Q14CB8 494 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 DGAT2L6Q6ZPD8 337 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 OR6S1Q8NH40 331 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 NUDCD2Q8WVJ2 157 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 UTP23Q9BRU9 249 aaKnown RBP13.01□□□□□ -0.33
SDC1-201ENST00000254351 COMMD4Q9H0A8 199 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 TAS2R8Q9NYW2 309 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 SPTBN5Q9NRC6 3674 aaKnown RBP13.01□□□□□ -0.33
SDC1-201ENST00000254351 MSGN1A6NI15 193 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 A6NLC8 198 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 OR2F2O95006 317 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 PVRP15151 417 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 VIPR2P41587 438 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 OR2F1Q13607 317 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 RAB11BQ15907 218 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 ZIC1Q15915 447 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 DHRS7BQ6IAN0 325 aaPredicted RBP13.01□□□□□ -0.33
SDC1-201ENST00000254351 CLEC9AQ6UXN8 241 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 PPP1R3BQ86XI6 285 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 CAMKVQ8NCB2 501 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 KREMEN2Q8NCW0 462 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 SLC2A12Q8TD20 617 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 RRNAD1Q96FB5 475 aaKnown RBP13.01□□□□□ -0.33
SDC1-201ENST00000254351 LINC00615Q96LM1 132 aaPredicted RBP13.01□□□□□ -0.33
SDC1-201ENST00000254351 RHOFQ9HBH0 211 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 MKKSQ9NPJ1 570 aaPredicted RBP13.01□□□□□ -0.33
SDC1-201ENST00000254351 KCNG2Q9UJ96 466 aa13.01□□□□□ -0.33
SDC1-201ENST00000254351 PQLC2LA1A4F0 135 aa13□□□□□ -0.33
SDC1-201ENST00000254351 C1orf196B1AJZ1 125 aa13□□□□□ -0.33
SDC1-201ENST00000254351 C9JQL5 133 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms