RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 KCNK15Q9H427 330 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 TMEM138Q9NPI0 162 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 DHDHQ9UQ10 334 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 LOC105371267A0A1B0GV96 52 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 hCG_1807616A0A1W2PRN6 198 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 FITM1A5D6W6 292 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 TLCD2A6NGC4 264 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 OR6C65A6NJZ3 312 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 F5H5P2 479 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 GOSR2O14653 212 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 SLC16A7O60669 478 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 RP2O75695 350 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 MT-ATP6P00846 226 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 IGLV3-19P01714 112 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 FCER2P06734 321 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 GP1BBP13224 206 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 ZNF35P13682 527 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 PGCP20142 388 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 S100A11P31949 105 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 OR1D4P47884 311 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 H2BFSP57053 126 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 RPL27P61353 136 aaKnown RBP16.89■□□□□ 0.29
CPSF3-201ENST00000238112 OC90Q02509 493 aaPredicted RBP16.89■□□□□ 0.29
CPSF3-201ENST00000238112 ACKR1Q16570 336 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 SMUG1Q53HV7 270 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 CHRDL2Q6WN34 429 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 OR2AK2Q8NG84 335 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 OR8S1Q8NH09 359 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 RNF128Q8TEB7 428 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 TBL1XR1Q9BZK7 514 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 SLC17A5Q9NRA2 495 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 CUTCQ9NTM9 273 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 CKLFQ9UBR5 152 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 NUP210LQ5VU65 1888 aa16.89■□□□□ 0.29
CPSF3-201ENST00000238112 FXYD6-FXYD2A0A087WZ82 144 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 ARPC4-TTLL3A0A0A6YYG9 625 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 C17orf51A8MQB3 221 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 HMSDA8MTL9 139 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 IGKV3-11P04433 115 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 SGCBQ16585 318 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 KCTD18Q6PI47 426 aaPredicted RBP16.88■□□□□ 0.29
CPSF3-201ENST00000238112 PLPP7Q8NBV4 271 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 LMX1AQ8TE12 382 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 ZNF721Q8TF20 911 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 FXYD6Q9H0Q3 95 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 EXO5Q9H790 373 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 UCK1Q9HA47 277 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 CACNA1IQ9P0X4 2223 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 DDAH2O95865 285 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 CD3DP04234 171 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 ACSM4P0C7M7 580 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 HOXD11P31277 338 aaPredicted RBP16.88■□□□□ 0.29
CPSF3-201ENST00000238112 NR0B1P51843 470 aaKnown RBP16.88■□□□□ 0.29
CPSF3-201ENST00000238112 ACTBP60709 375 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 UBE2MP61081 183 aaKnown RBP16.88■□□□□ 0.29
CPSF3-201ENST00000238112 DCAF7P61962 342 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 ACTG1P63261 375 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 ADAM8P78325 824 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 HLXQ14774 488 aaPredicted RBP16.88■□□□□ 0.29
CPSF3-201ENST00000238112 ARHGAP40Q5TG30 622 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 GLT8D1Q68CQ7 371 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 C11orf88Q6PI97 169 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 NDUFAF7Q7L592 441 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 GKN2Q86XP6 184 aa16.88■□□□□ 0.29
CPSF3-201ENST00000238112 MUC20Q8N307 709 aaPredicted RBP16.88■□□□□ 0.29
CPSF3-201ENST00000238112 TMEM272A0A1B0GTI8 110 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 EIF4E2O60573 245 aaKnown RBP16.87■□□□□ 0.29
CPSF3-201ENST00000238112 CD2P06729 351 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 SSBP1Q04837 148 aaKnown RBP16.87■□□□□ 0.29
CPSF3-201ENST00000238112 ZP2Q05996 745 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 PLCXD2Q0VAA5 305 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 C2orf68Q2NKX9 166 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 C4orf46Q504U0 113 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 TEX30Q5JUR7 227 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 SFRP5Q5T4F7 317 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 OR7E24Q6IFN5 339 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 STEAP1BQ6NZ63 245 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 TMUB2Q71RG4 321 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 BIVMQ86UB2 503 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 BPHLQ86WA6 291 aaPredicted RBP16.87■□□□□ 0.29
CPSF3-201ENST00000238112 ZNF519Q8TB69 540 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.87■□□□□ 0.29
CPSF3-201ENST00000238112 DVL3Q92997 716 aaPredicted RBP16.87■□□□□ 0.29
CPSF3-201ENST00000238112 NUDT9Q9BW91 350 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 ARL6Q9H0F7 186 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 APMAPQ9HDC9 416 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 MED11Q9P086 117 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 EPHA6Q9UF33 1036 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 TTLL8A6PVC2 850 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 WNT11O96014 354 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 PNPP00491 289 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 RIDAP52758 137 aaKnown RBP16.87■□□□□ 0.29
CPSF3-201ENST00000238112 GMFBP60983 142 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 EBPQ15125 230 aaKnown RBP16.87■□□□□ 0.29
CPSF3-201ENST00000238112 ELAVL1Q15717 326 aaKnown RBP16.87■□□□□ 0.29
CPSF3-201ENST00000238112 TMEM225Q6GV28 225 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 GPAT4Q86UL3 456 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 PTDSS2Q9BVG9 487 aa16.87■□□□□ 0.29
CPSF3-201ENST00000238112 MRPL22Q9NWU5 206 aaKnown RBP16.87■□□□□ 0.29
CPSF3-201ENST00000238112 ALG1L2C9J202 215 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms