RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SLC6A6P31641 620 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 COX10Q12887 443 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 KEAP1Q14145 624 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 MICAQ29983 383 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 ZNF544Q6NX49 715 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 PGBD2Q6P3X8 592 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 ZNF620Q6ZNG0 422 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 CCDC121Q6ZUS5 278 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 FOXL2NBQ6ZUU3 175 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 FANK1Q8TC84 345 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 HDAC2Q92769 488 aaKnown RBP15.94■□□□□ 0.14
CLN3-259ENST00000637551 ZNF837Q96EG3 531 aaPredicted RBP15.94■□□□□ 0.14
CLN3-259ENST00000637551 DUS3LQ96G46 650 aaKnown RBP15.94■□□□□ 0.14
CLN3-259ENST00000637551 TSPAN32Q96QS1 320 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 IL20Q9NYY1 176 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 ZNF346Q9UL40 294 aaKnown RBP15.94■□□□□ 0.14
CLN3-259ENST00000637551 CST1P01037 141 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 CRYAAP02489 173 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 ZNF26P17031 533 aaPredicted RBP15.93■□□□□ 0.14
CLN3-259ENST00000637551 CDH2P19022 906 aaPredicted RBP15.93■□□□□ 0.14
CLN3-259ENST00000637551 CD53P19397 219 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 ACVR1BP36896 505 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 RUNX1T1Q06455 604 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 GSG1Q2KHT4 349 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 RFX4Q33E94 735 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 RASSF6Q6ZTQ3 369 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 SPATA24Q86W54 205 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 WDFY1Q8IWB7 410 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 SLC22A24Q8N4F4 322 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 OR4F15Q8NGB8 312 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 DNAJC9Q8WXX5 260 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 NRBF2Q96F24 287 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 ZNF570Q96NI8 536 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 SIAEQ9HAT2 523 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 VSX1Q9NZR4 365 aaPredicted RBP15.93■□□□□ 0.14
CLN3-259ENST00000637551 BAIAP2Q9UQB8 552 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 CDH10Q9Y6N8 788 aa15.93■□□□□ 0.14
CLN3-259ENST00000637551 PRSS37A4D1T9 235 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 PTHP01270 115 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 B4GALT1P15291 398 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 GUCA1AP43080 201 aaPredicted RBP15.92■□□□□ 0.14
CLN3-259ENST00000637551 PTDSS1P48651 473 aaKnown RBP15.92■□□□□ 0.14
CLN3-259ENST00000637551 ZNF83P51522 516 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 FXYD6P3P58550 94 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 CD47Q08722 323 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 SLC36A2Q495M3 483 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 SLC25A47Q6Q0C1 308 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 DTX2Q86UW9 622 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 OR52L1Q8NGH7 329 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 AKAP1Q92667 903 aaKnown RBP eCLIP15.92■□□□□ 0.14
CLN3-259ENST00000637551 KCNS3Q9BQ31 491 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 OR52D1Q9H346 318 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 CXorf56Q9H5V9 222 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 DNAJB9Q9UBS3 223 aa15.92■□□□□ 0.14
CLN3-259ENST00000637551 A0A096LPE4 126 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 IGHV1-18A0A0C4DH31 117 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 A0A1W2PPZ6 126 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 M0R1B8 84 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 DEAF1O75398 565 aaPredicted RBP15.91■□□□□ 0.14
CLN3-259ENST00000637551 FCGR1AP12314 374 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 IST1P53990 364 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 CDH11P55287 796 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 FOXD4Q12950 439 aaPredicted RBP15.91■□□□□ 0.14
CLN3-259ENST00000637551 TOP3AQ13472 1001 aaPredicted RBP15.91■□□□□ 0.14
CLN3-259ENST00000637551 KRR1Q13601 381 aaKnown RBP15.91■□□□□ 0.14
CLN3-259ENST00000637551 DEFB113Q30KQ7 82 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 FAM27BQ5VT28 67 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 SLC22A25Q6T423 547 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 YTHDF3Q7Z739 585 aaKnown RBP15.91■□□□□ 0.14
CLN3-259ENST00000637551 SYT9Q86SS6 491 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 C10orf67Q8IYJ2 551 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 NUP37Q8NFH4 326 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 LILRB1Q8NHL6 650 aaPredicted RBP15.91■□□□□ 0.14
CLN3-259ENST00000637551 GTPBP3Q969Y2 492 aaKnown RBP15.91■□□□□ 0.14
CLN3-259ENST00000637551 CCL19Q99731 98 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 GPA33Q99795 319 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 DHRS9Q9BPW9 319 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 UBTD1Q9HAC8 227 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 ARMC1Q9NVT9 282 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 ZNF224Q9NZL3 707 aa15.91■□□□□ 0.14
CLN3-259ENST00000637551 TEX13CA0A0J9YWL9 993 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 SLC22A23A1A5C7 686 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 FKBP6O75344 327 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 CIB2O75838 187 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 RAB36O95755 333 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 CECR9P0C854 216 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 DANCRP0C864 163 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 CRABP1P29762 137 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 ARHGDIAP52565 204 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 ERVK-25P63136 954 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 NAAAQ02083 359 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 MESTQ5EB52 335 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 C1orf146Q5VVC0 180 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 DNM1P34Q6PK57 102 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 THSD4Q6ZMP0 1018 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 SYT14Q8NB59 555 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 KBTBD8Q8NFY9 601 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 Q96M85 177 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 ZNF75AQ96N20 296 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 GSX2Q9BZM3 304 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms