RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, human

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-255	ENST00000637100	C11orf98	E9PRG8	122 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	FARS2	O95363	451 aa	Known RBP	13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	IGF2	P01344	180 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	QDPR	P09417	244 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	FAM157B	P0CG42	384 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	ADRA2C	P18825	462 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	MMP15	P51511	669 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	MVK	Q03426	396 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	SLC36A2	Q495M3	483 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	RUNDC3A	Q59EK9	446 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	C10orf128	Q5T292	105 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	TMEM53	Q6P2H8	277 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	THSD4	Q6ZMP0	1018 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	OR4K5	Q8NGD3	323 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	OR6T1	Q8NGN1	323 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	NANP	Q8TBE9	248 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	MCHR2	Q969V1	340 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	NMD3	Q96D46	503 aa	Known RBP	13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	MPP4	Q96JB8	637 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	C7orf26	Q96N11	449 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	CPPED1	Q9BRF8	314 aa	Predicted RBP	13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	CDH20	Q9HBT6	801 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	KLHL21	Q9UJP4	597 aa		13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	13.96	□□□□□ -0.17
CLN3-255	ENST00000637100	CDC14B	O60729	498 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	CCL2	P13500	99 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	TBC1D28	Q2M2D7	210 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	ALKBH6	Q3KRA9	238 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	AWAT1	Q58HT5	328 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	TMEM255A	Q5JRV8	349 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	ENTPD8	Q5MY95	495 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	AVPI1	Q5T686	147 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	USP51	Q70EK9	711 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	C10orf53	Q8N6V4	93 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	LRRC17	Q8N6Y2	441 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	CPEB3	Q8NE35	698 aa	Known RBP	13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	OR4D11	Q8NGI4	311 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	SNX33	Q8WV41	574 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	LIPH	Q8WWY8	451 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	TRIM44	Q96DX7	344 aa	Predicted RBP	13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	PRSS27	Q9BQR3	290 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	CCDC28B	Q9BUN5	200 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	ZNF747	Q9BV97	191 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	ZNF696	Q9H7X3	374 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	NANS	Q9NR45	359 aa		13.95	□□□□□ -0.18
CLN3-255	ENST00000637100	NPIPB13	A6NJU9	1138 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	EVPLL	A8MZ36	301 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	CLDN25	C9JDP6	229 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	NPIPB4	C9JG80	1138 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100		M0QX08	132 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100		M0R3H8	397 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	SERPINI2	O75830	405 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	UBOX5	O94941	541 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	OR6A2	O95222	327 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	CH25H	O95992	272 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	IDH3A	P50213	366 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	ATP4B	P51164	291 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	STX1B	P61266	288 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	UBA52	P62987	128 aa	Known RBP	13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	MRPS34	P82930	218 aa	Known RBP	13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	SLC16A14	Q7RTX9	510 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	C1orf174	Q8IYL3	243 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	DPP10	Q8N608	796 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	SMYD1	Q8NB12	490 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	RNF217	Q8TC41	542 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	ADAMTS16	Q8TE57	1224 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	RAB1C	Q92928	201 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	MARS2	Q96GW9	593 aa	Known RBP	13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	POM121L2	Q96KW2	1035 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	SLC6A7	Q99884	636 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	LRMDA	Q9H2I8	198 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	SIAE	Q9HAT2	523 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	SMURF2	Q9HAU4	748 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	MEPE	Q9NQ76	525 aa	Predicted RBP	13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	CCDC167	Q9P0B6	97 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	SLC13A4	Q9UKG4	626 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	ANGPT4	Q9Y264	503 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	CACNG2	Q9Y698	323 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100		V9GYY5	206 aa	Predicted RBP	13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	WNK2	Q9Y3S1	2297 aa		13.94	□□□□□ -0.18
CLN3-255	ENST00000637100	TRAPPC13	A5PLN9	417 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	KCNAB3	O43448	404 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	RNF13	O43567	381 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	BCL10	O95999	233 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	IGHV1-46	P01743	117 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	IGHG1	P01857	330 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	LCK	P06239	509 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	HKR1	P10072	659 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	CD247	P20963	164 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	AQP1	P29972	269 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	UGT2B15	P54855	530 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	MAGOH	P61326	146 aa	Known RBP	13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	PLP2	Q04941	152 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	MELK	Q14680	651 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	HFE	Q30201	348 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	DCAF12L2	Q5VW00	463 aa		13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	MBNL2	Q5VZF2	373 aa	Known RBP	13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	TTC33	Q6PID6	262 aa	Predicted RBP	13.93	□□□□□ -0.18
CLN3-255	ENST00000637100	RBM45	Q8IUH3	476 aa	Known RBP	13.93	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms