RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 POU4F3Q15319 338 aa15.03■□□□□ -0
CLN3-252ENST00000636907 RPTNQ6XPR3 784 aa15.03■□□□□ -0
CLN3-252ENST00000636907 ASB18Q6ZVZ8 466 aa15.03■□□□□ -0
CLN3-252ENST00000636907 HDDC2Q7Z4H3 204 aa15.03■□□□□ -0
CLN3-252ENST00000636907 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.03■□□□□ -0
CLN3-252ENST00000636907 NOXO1Q8NFA2 376 aa15.03■□□□□ -0
CLN3-252ENST00000636907 OR10D3Q8NH80 312 aa15.03■□□□□ -0
CLN3-252ENST00000636907 PELI1Q96FA3 418 aa15.03■□□□□ -0
CLN3-252ENST00000636907 MRPL48Q96GC5 212 aaKnown RBP15.03■□□□□ -0
CLN3-252ENST00000636907 MYCBPQ99417 103 aaPredicted RBP15.03■□□□□ -0
CLN3-252ENST00000636907 MNTQ99583 582 aa15.03■□□□□ -0
CLN3-252ENST00000636907 TMED9Q9BVK6 235 aa15.03■□□□□ -0
CLN3-252ENST00000636907 GNG8Q9UK08 70 aa15.03■□□□□ -0
CLN3-252ENST00000636907 PSMD9O00233 223 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 ZNF593O00488 134 aaPredicted RBP15.02□□□□□ -0.01
CLN3-252ENST00000636907 KHDRBS3O75525 346 aaKnown RBP15.02□□□□□ -0.01
CLN3-252ENST00000636907 CEACAM4O75871 244 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 ALOX5APP20292 161 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 EIF1AXP47813 144 aaKnown RBP15.02□□□□□ -0.01
CLN3-252ENST00000636907 TAS2R43P59537 309 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 TUBA1BP68363 451 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 FABP5Q01469 135 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 GLO1Q04760 184 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 MEP1BQ16820 701 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 ZNF684Q5T5D7 378 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 CARD17Q5XLA6 110 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 CREB3L2Q70SY1 520 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 TUBA1AQ71U36 451 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 TRILQ7L0X0 811 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 OR9K2Q8NGE7 335 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 RBP7Q96R05 134 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 ACOXLQ9NUZ1 547 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 TXNL4BQ9NX01 149 aaKnown RBP15.02□□□□□ -0.01
CLN3-252ENST00000636907 KCNG2Q9UJ96 466 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 LAMP5Q9UJQ1 280 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 ING1Q9UK53 422 aaPredicted RBP15.02□□□□□ -0.01
CLN3-252ENST00000636907 PMF1-BGLAPU3KQ54 211 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 ZFHX4Q86UP3 3567 aa15.02□□□□□ -0.01
CLN3-252ENST00000636907 ZNF726A6NNF4 738 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 NPIPA2E9PIF3 369 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 NPIPA3F8WFD2 350 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 MPZL1O95297 269 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 SDHBP21912 280 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 LHX2P50458 406 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 GBX2P52951 348 aaPredicted RBP15.01□□□□□ -0.01
CLN3-252ENST00000636907 SLC17A1Q14916 467 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 DGUOKQ16854 277 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 THEM4Q5T1C6 240 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 CD200R1LQ6Q8B3 271 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 ARL9Q6T311 187 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 SLC22A16Q86VW1 577 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 SLC26A10Q8NG04 563 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 OTOSQ8NHW6 89 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 TBC1D15Q8TC07 691 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 NSMAFQ92636 917 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 ZNF385AQ96PM9 386 aaKnown RBP15.01□□□□□ -0.01
CLN3-252ENST00000636907 DCLRE1CQ96SD1 692 aaKnown RBP15.01□□□□□ -0.01
CLN3-252ENST00000636907 QPCTLQ9NXS2 382 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 ST6GALNAC2Q9UJ37 374 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 WASF3Q9UPY6 502 aa15.01□□□□□ -0.01
CLN3-252ENST00000636907 TRDV1A0A1B0GX56 115 aa15□□□□□ -0.01
CLN3-252ENST00000636907 CENPBD1B2RD01 187 aa15□□□□□ -0.01
CLN3-252ENST00000636907 PLPP2O43688 288 aa15□□□□□ -0.01
CLN3-252ENST00000636907 CLPXO76031 633 aa15□□□□□ -0.01
CLN3-252ENST00000636907 GAAP10253 952 aa15□□□□□ -0.01
CLN3-252ENST00000636907 CLDN18P56856 261 aa15□□□□□ -0.01
CLN3-252ENST00000636907 ADAM8P78325 824 aa15□□□□□ -0.01
CLN3-252ENST00000636907 DMKNQ6E0U4 476 aaPredicted RBP15□□□□□ -0.01
CLN3-252ENST00000636907 C22orf42Q6IC83 251 aa15□□□□□ -0.01
CLN3-252ENST00000636907 PLEKHG7Q6ZR37 379 aa15□□□□□ -0.01
CLN3-252ENST00000636907 THEM6Q8WUY1 208 aa15□□□□□ -0.01
CLN3-252ENST00000636907 ROBO4Q8WZ75 1007 aa15□□□□□ -0.01
CLN3-252ENST00000636907 ZNF845Q96IR2 970 aaPredicted RBP15□□□□□ -0.01
CLN3-252ENST00000636907 AMELYQ99218 206 aa15□□□□□ -0.01
CLN3-252ENST00000636907 SF3B5Q9BWJ5 86 aaKnown RBP15□□□□□ -0.01
CLN3-252ENST00000636907 MRM2Q9UI43 246 aaKnown RBP15□□□□□ -0.01
CLN3-252ENST00000636907 TMEM14AQ9Y6G1 99 aa15□□□□□ -0.01
CLN3-252ENST00000636907 OGG1O15527 345 aa15□□□□□ -0.01
CLN3-252ENST00000636907 ITGB2P05107 769 aa15□□□□□ -0.01
CLN3-252ENST00000636907 SPARCP09486 303 aa15□□□□□ -0.01
CLN3-252ENST00000636907 OR8G3PP0DMU2 310 aa15□□□□□ -0.01
CLN3-252ENST00000636907 PSMB10P40306 273 aa15□□□□□ -0.01
CLN3-252ENST00000636907 ENTPD1P49961 510 aa15□□□□□ -0.01
CLN3-252ENST00000636907 SIRPAP78324 504 aa15□□□□□ -0.01
CLN3-252ENST00000636907 SLC3A1Q07837 685 aa15□□□□□ -0.01
CLN3-252ENST00000636907 HIST3H3Q16695 136 aa15□□□□□ -0.01
CLN3-252ENST00000636907 RNFT1Q5M7Z0 435 aa15□□□□□ -0.01
CLN3-252ENST00000636907 PDSS1Q5T2R2 415 aa15□□□□□ -0.01
CLN3-252ENST00000636907 LRRC69Q6ZNQ3 347 aa15□□□□□ -0.01
CLN3-252ENST00000636907 FAM109AQ8N4B1 249 aa15□□□□□ -0.01
CLN3-252ENST00000636907 ZIC4Q8N9L1 334 aa15□□□□□ -0.01
CLN3-252ENST00000636907 PGLYRP3Q96LB9 341 aa15□□□□□ -0.01
CLN3-252ENST00000636907 HDHD5Q9BXW7 423 aa15□□□□□ -0.01
CLN3-252ENST00000636907 SLIRPQ9GZT3 109 aaKnown RBP15□□□□□ -0.01
CLN3-252ENST00000636907 LIPGQ9Y5X9 500 aa15□□□□□ -0.01
CLN3-252ENST00000636907 CD8B2A6NJW9 211 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 ACOT7O00154 380 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 GABRPO00591 440 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 PHYHO14832 338 aa14.99□□□□□ -0.01
CLN3-252ENST00000636907 HLA-DPB1P04440 258 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms