RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OTOGQ6ZRI0 2925 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 IGHV1-18A0A0C4DH31 117 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 IGLV1-44P01699 117 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 HLA-HP01893 362 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 GUCA1AP43080 201 aaPredicted RBP18.04■□□□□ 0.48
CLN3-240ENST00000631023 RPS6KA3P51812 740 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 PGBD2Q6P3X8 592 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 FAM122BQ7Z309 247 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 DPPA2Q7Z7J5 298 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 MDP1Q86V88 176 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 IL17RDQ8NFM7 739 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 OR4C15Q8NGM1 316 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 FANK1Q8TC84 345 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 SMAP2Q8WU79 429 aaPredicted RBP18.04■□□□□ 0.48
CLN3-240ENST00000631023 TMEM171Q8WVE6 324 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 Q96M85 177 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 LRMDAQ9H2I8 198 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 TCRBV3S1A0A5B6 114 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 GNGT2O14610 69 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 TMCC2O75069 709 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 NPR2P20594 1047 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 SDHAP31040 664 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 SLC6A6P31641 620 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 IDH3GP51553 393 aaPredicted RBP18.03■□□□□ 0.48
CLN3-240ENST00000631023 SPOCK1Q08629 439 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 NPRL3Q12980 569 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 RFX4Q33E94 735 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 CCDC121Q6ZUS5 278 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 SKA3Q8IX90 412 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 NSMAFQ92636 917 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 NMD3Q96D46 503 aaKnown RBP18.03■□□□□ 0.48
CLN3-240ENST00000631023 OR52D1Q9H346 318 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 IL20RAQ9UHF4 553 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 FBXL3Q9UKT7 428 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 ATP23Q9Y6H3 246 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 U3KQV3 271 aa18.03■□□□□ 0.48
CLN3-240ENST00000631023 SMPD2O60906 423 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 SLC2A10O95528 541 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 RAB36O95755 333 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 CECR9P0C854 216 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 APEHP13798 732 aaKnown RBP18.02■□□□□ 0.48
CLN3-240ENST00000631023 FXYD6P3P58550 94 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 RAB1AP62820 205 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 FMODQ06828 376 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 PIGFQ07326 219 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 MICAQ29983 383 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 RPL13AP3Q6NVV1 102 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 SLC25A47Q6Q0C1 308 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 THSD4Q6ZMP0 1018 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 OR9Q2Q8NGE9 314 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 KCNN2Q9H2S1 579 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 MOKQ9UQ07 419 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 IER3IP1Q9Y5U9 82 aa18.02■□□□□ 0.48
CLN3-240ENST00000631023 ZNF503-AS2A6NEH8 195 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 PTDSS1P48651 473 aaKnown RBP18.01■□□□□ 0.47
CLN3-240ENST00000631023 MRPS34P82930 218 aaKnown RBP18.01■□□□□ 0.47
CLN3-240ENST00000631023 NAAAQ02083 359 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 PPP1R8Q12972 351 aaKnown RBP18.01■□□□□ 0.47
CLN3-240ENST00000631023 KRR1Q13601 381 aaKnown RBP18.01■□□□□ 0.47
CLN3-240ENST00000631023 SLC36A2Q495M3 483 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 SLC16A14Q7RTX9 510 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 ADCK1Q86TW2 530 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 SH3GL3Q99963 347 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 DHRS9Q9BPW9 319 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 CXorf56Q9H5V9 222 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 SIAEQ9HAT2 523 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 LAMP3Q9UQV4 416 aa18.01■□□□□ 0.47
CLN3-240ENST00000631023 TEX13CA0A0J9YWL9 993 aa18■□□□□ 0.47
CLN3-240ENST00000631023 SLC22A23A1A5C7 686 aa18■□□□□ 0.47
CLN3-240ENST00000631023 PRSS37A4D1T9 235 aa18■□□□□ 0.47
CLN3-240ENST00000631023 ATP6V1G2-DDX39BF2Z307 99 aa18■□□□□ 0.47
CLN3-240ENST00000631023 EBAG9O00559 213 aa18■□□□□ 0.47
CLN3-240ENST00000631023 GASTP01350 101 aa18■□□□□ 0.47
CLN3-240ENST00000631023 GIPRP48546 466 aa18■□□□□ 0.47
CLN3-240ENST00000631023 MESTQ5EB52 335 aa18■□□□□ 0.47
CLN3-240ENST00000631023 ZNF770Q6IQ21 691 aaPredicted RBP18■□□□□ 0.47
CLN3-240ENST00000631023 CLDN22Q8N7P3 220 aa18■□□□□ 0.47
CLN3-240ENST00000631023 AQP11Q8NBQ7 271 aa18■□□□□ 0.47
CLN3-240ENST00000631023 IFT27Q9BW83 186 aa18■□□□□ 0.47
CLN3-240ENST00000631023 CXXC4Q9H2H0 198 aa18■□□□□ 0.47
CLN3-240ENST00000631023 RNF121Q9H920 327 aa18■□□□□ 0.47
CLN3-240ENST00000631023 ZNF224Q9NZL3 707 aa18■□□□□ 0.47
CLN3-240ENST00000631023 ITPR3Q14573 2671 aa18■□□□□ 0.47
CLN3-240ENST00000631023 AKAP9Q99996 3911 aa18■□□□□ 0.47
CLN3-240ENST00000631023 E7EQL1 145 aa18■□□□□ 0.47
CLN3-240ENST00000631023 SOCS2O14508 198 aa18■□□□□ 0.47
CLN3-240ENST00000631023 IMPA2O14732 288 aa18■□□□□ 0.47
CLN3-240ENST00000631023 FKBP6O75344 327 aa18■□□□□ 0.47
CLN3-240ENST00000631023 TXNDC12O95881 172 aa18■□□□□ 0.47
CLN3-240ENST00000631023 CELA3BP08861 270 aa18■□□□□ 0.47
CLN3-240ENST00000631023 DANCRP0C864 163 aa18■□□□□ 0.47
CLN3-240ENST00000631023 GSTM3P21266 225 aa18■□□□□ 0.47
CLN3-240ENST00000631023 TESK1Q15569 626 aa18■□□□□ 0.47
CLN3-240ENST00000631023 SGCAQ16586 387 aa18■□□□□ 0.47
CLN3-240ENST00000631023 PGGHGQ32M88 737 aa18■□□□□ 0.47
CLN3-240ENST00000631023 C1orf146Q5VVC0 180 aa18■□□□□ 0.47
CLN3-240ENST00000631023 AGAP6Q5VW22 663 aa18■□□□□ 0.47
CLN3-240ENST00000631023 TMEM53Q6P2H8 277 aa18■□□□□ 0.47
CLN3-240ENST00000631023 ZNF620Q6ZNG0 422 aa18■□□□□ 0.47
CLN3-240ENST00000631023 PAPD5Q8NDF8 572 aaKnown RBP18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms