RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 RASSF6Q6ZTQ3 369 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 FAM122BQ7Z309 247 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 JAZF1Q86VZ6 243 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 HS3ST5Q8IZT8 346 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 FNDC8Q8TC99 324 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 LRTOMTQ8WZ04 291 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 NSMAFQ92636 917 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 BCL2L2Q92843 193 aaPredicted RBP15.83■□□□□ 0.12
CLN3-239ENST00000628023 MBD6Q96DN6 1003 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 PLPPR2Q96GM1 343 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 RBP7Q96R05 134 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 KCNK17Q96T54 332 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 NIPSNAP1Q9BPW8 284 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 OBP2BQ9NPH6 170 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 SLC25A15Q9Y619 301 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 NF1P21359 2839 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 ENTPD5O75356 428 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 SLC2A10O95528 541 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 HRGP04196 525 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 ZNF23P17027 643 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 ZNF83P51522 516 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 THEM4Q5T1C6 240 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 LRFN4Q6PJG9 635 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 PAMR1Q6UXH9 720 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 AMIGO2Q86SJ2 522 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 ADCK1Q86TW2 530 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 CLDN22Q8N7P3 220 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 WDR31Q8NA23 367 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 OR5K1Q8NHB7 308 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 TEX47Q8TBZ9 253 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 NANOS1Q8WY41 292 aaKnown RBP15.82■□□□□ 0.12
CLN3-239ENST00000628023 NRBF2Q96F24 287 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 C1QTNF6Q9BXI9 259 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 DENND2DQ9H6A0 471 aaPredicted RBP15.82■□□□□ 0.12
CLN3-239ENST00000628023 ESRP2Q9H6T0 727 aaKnown RBP15.82■□□□□ 0.12
CLN3-239ENST00000628023 NTN4Q9HB63 628 aa15.82■□□□□ 0.12
CLN3-239ENST00000628023 ZFHX3Q15911 3703 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 ERICH4A6NGS2 130 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 H3BN98 237 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 M0R1B8 84 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 SIAH2O43255 324 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 FARS2O95363 451 aaKnown RBP15.81■□□□□ 0.12
CLN3-239ENST00000628023 APEHP13798 732 aaKnown RBP15.81■□□□□ 0.12
CLN3-239ENST00000628023 ANXA8P13928 327 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 PRKACGP22612 351 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 TUBA1BP68363 451 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 TUBA4AP68366 448 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 COX10Q12887 443 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 HIST3H3Q16695 136 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 TUBA1AQ71U36 451 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 HIPK1Q86Z02 1210 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 TSSK6Q9BXA6 273 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 SEMA6AQ9H2E6 1030 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 NELFAQ9H3P2 528 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 SMURF2Q9HAU4 748 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 TMEM38BQ9NVV0 291 aa15.81■□□□□ 0.12
CLN3-239ENST00000628023 PRR14LQ5THK1 2151 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 ARPC4-TTLL3A0A0A6YYG9 625 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 PRSS37A4D1T9 235 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 G3V2T6 193 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 IMPA2O14732 288 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 CD3EP07766 207 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 CD79AP11912 226 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 HOXB1P14653 301 aaPredicted RBP15.8■□□□□ 0.12
CLN3-239ENST00000628023 FOSL1P15407 271 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 GUCA1AP43080 201 aaPredicted RBP15.8■□□□□ 0.12
CLN3-239ENST00000628023 KRTAP21-3Q3LHN1 58 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 C10orf128Q5T292 105 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 C1QTNF12Q5T7M4 302 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 LEG1Q6P5S2 330 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 TMEM108Q6UXF1 575 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 ZDHHC13Q8IUH4 622 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 CCDC36Q8IYA8 594 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 SLC22A24Q8N4F4 322 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 STMN2Q93045 179 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 BOD1Q96IK1 185 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 PLA2G12AQ9BZM1 189 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 RERGLQ9H628 205 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 IL20Q9NYY1 176 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 NPAP1Q9NZP6 1156 aa15.8■□□□□ 0.12
CLN3-239ENST00000628023 A0A1W2PPL8 197 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 SLC22A23A1A5C7 686 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 ARPC3O15145 178 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 IDH3BO43837 385 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 AHCYL1O43865 530 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 TXNDC12O95881 172 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 RENP00797 406 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 IGFBP1P08833 259 aaPredicted RBP15.79■□□□□ 0.12
CLN3-239ENST00000628023 OR8G3PP0DMU2 310 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 PAX7P23759 505 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 POU1F1P28069 291 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 BSPH1Q075Z2 132 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 DEFB113Q30KQ7 82 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 SLC36A3Q495N2 470 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 CD300LDQ6UXZ3 194 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 ZNF627Q7L945 461 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 SVOPLQ8N434 492 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 ICA1LQ8NDH6 482 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 OR2T33Q8NG76 320 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 OR8D4Q8NGM9 314 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms